miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 47420 1.11 0.001568
Target:  5'- gGCCACCAUCUGAGUGCCCAACCGGGGc -3'
miRNA:   3'- -CGGUGGUAGACUCACGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 136873 0.66 0.829174
Target:  5'- aCCGCCGUCgagGAGcGCCUcgcgccccacGGCUGGGu -3'
miRNA:   3'- cGGUGGUAGa--CUCaCGGG----------UUGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 98054 0.66 0.829174
Target:  5'- aCCACCAgccCcGGGcGCUCGGCCuGGGGc -3'
miRNA:   3'- cGGUGGUa--GaCUCaCGGGUUGG-CCCC- -5'
29482 5' -57.5 NC_006151.1 + 9035 0.67 0.820802
Target:  5'- cCCGCCcgCcgGGGcGCCCcgcgugcuCCGGGGg -3'
miRNA:   3'- cGGUGGuaGa-CUCaCGGGuu------GGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 26230 0.67 0.820802
Target:  5'- gGCCGCCGUguuuaUUGAGgGCaCAACagaGGGGa -3'
miRNA:   3'- -CGGUGGUA-----GACUCaCGgGUUGg--CCCC- -5'
29482 5' -57.5 NC_006151.1 + 40041 0.67 0.818258
Target:  5'- cGCCGCCGggggCgccgugGAGacccaccgGCCCGcgggggccucgggcGCCGGGGc -3'
miRNA:   3'- -CGGUGGUa---Ga-----CUCa-------CGGGU--------------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 646 0.67 0.812264
Target:  5'- cGCCGgCuUCcGGG-GCgCGGCCGGGGc -3'
miRNA:   3'- -CGGUgGuAGaCUCaCGgGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 133610 0.67 0.812264
Target:  5'- gGCCGaggggCGUCUGGGgGUCgcggCGGCCGGGGc -3'
miRNA:   3'- -CGGUg----GUAGACUCaCGG----GUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 99669 0.67 0.812264
Target:  5'- cGCagaGCCG-CUGGG-GCCUGcgcgccgacggcGCCGGGGa -3'
miRNA:   3'- -CGg--UGGUaGACUCaCGGGU------------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 91395 0.66 0.837371
Target:  5'- cGCUGCCGUCgacguUGCCCAggaacacgGCCuGGGGc -3'
miRNA:   3'- -CGGUGGUAGacuc-ACGGGU--------UGG-CCCC- -5'
29482 5' -57.5 NC_006151.1 + 120112 0.66 0.837371
Target:  5'- cGCCGCCGcgUGGuggacaUGCUCAACgGGGGc -3'
miRNA:   3'- -CGGUGGUagACUc-----ACGGGUUGgCCCC- -5'
29482 5' -57.5 NC_006151.1 + 11018 0.66 0.845387
Target:  5'- cCCGCCcgCUcgcucgccGGGccGgCCGGCCGGGGg -3'
miRNA:   3'- cGGUGGuaGA--------CUCa-CgGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 113085 0.66 0.860846
Target:  5'- cGCgGCCGUCgcc--GCCgCcACCGGGGg -3'
miRNA:   3'- -CGgUGGUAGacucaCGG-GuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 29756 0.66 0.853214
Target:  5'- -aCACUcUCUGuGUGUgCAcacgggACCGGGGa -3'
miRNA:   3'- cgGUGGuAGACuCACGgGU------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 1797 0.66 0.853214
Target:  5'- gGCCACCGggCcGGGgagGCaggcGCCGGGGa -3'
miRNA:   3'- -CGGUGGUa-GaCUCa--CGggu-UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 36115 0.66 0.845387
Target:  5'- gGCCGCCGUCcucgcgGCCgCGGCCGGa- -3'
miRNA:   3'- -CGGUGGUAGacuca-CGG-GUUGGCCcc -5'
29482 5' -57.5 NC_006151.1 + 24868 0.66 0.845387
Target:  5'- aCCACCGUgUccgccucGCCCGGCCGGcGGg -3'
miRNA:   3'- cGGUGGUAgAcuca---CGGGUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 73581 0.66 0.845387
Target:  5'- aCCACCGUCaGGGcGa--AGCCGGGGu -3'
miRNA:   3'- cGGUGGUAGaCUCaCgggUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 66186 0.66 0.845387
Target:  5'- gGCCGCCAUaa-AG-GCCCGgacgaACuCGGGGu -3'
miRNA:   3'- -CGGUGGUAgacUCaCGGGU-----UG-GCCCC- -5'
29482 5' -57.5 NC_006151.1 + 37160 0.66 0.845387
Target:  5'- cGCCACCGUCUccgccGGcGCCC-GCCGcGGc -3'
miRNA:   3'- -CGGUGGUAGAc----UCaCGGGuUGGC-CCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.