miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 133610 0.67 0.812264
Target:  5'- gGCCGaggggCGUCUGGGgGUCgcggCGGCCGGGGc -3'
miRNA:   3'- -CGGUg----GUAGACUCaCGG----GUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 646 0.67 0.812264
Target:  5'- cGCCGgCuUCcGGG-GCgCGGCCGGGGc -3'
miRNA:   3'- -CGGUgGuAGaCUCaCGgGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 138628 0.67 0.803566
Target:  5'- cGCCGCCGg--GGGcgcGCCgGACUGGGa -3'
miRNA:   3'- -CGGUGGUagaCUCa--CGGgUUGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 121331 0.67 0.803566
Target:  5'- gGCCGCCGagCUG-GUGCgCGACCucgaGGGc -3'
miRNA:   3'- -CGGUGGUa-GACuCACGgGUUGGc---CCC- -5'
29482 5' -57.5 NC_006151.1 + 80673 0.67 0.803566
Target:  5'- cGCaCGCagagaGUCUGGGUucgcgGCCCGGCgCGGGc -3'
miRNA:   3'- -CG-GUGg----UAGACUCA-----CGGGUUG-GCCCc -5'
29482 5' -57.5 NC_006151.1 + 78662 0.67 0.798274
Target:  5'- gGCgGCCGgggCgcGGGUGCuggacgggcucuacgCCGGCCGGGGc -3'
miRNA:   3'- -CGgUGGUa--Ga-CUCACG---------------GGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 4181 0.67 0.794717
Target:  5'- cGCgGCCGUCaccuccucGAGgcaggcggGCCCGagggcgGCCGGGGc -3'
miRNA:   3'- -CGgUGGUAGa-------CUCa-------CGGGU------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 69903 0.67 0.789339
Target:  5'- cGCCGCCGUCgugaagccgucaaagUGGGcGCCgAgcGCCaGGGGc -3'
miRNA:   3'- -CGGUGGUAG---------------ACUCaCGGgU--UGG-CCCC- -5'
29482 5' -57.5 NC_006151.1 + 132845 0.67 0.785725
Target:  5'- gGCCACCAc--GGGcgGCCgGcCCGGGGc -3'
miRNA:   3'- -CGGUGGUagaCUCa-CGGgUuGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 2130 0.67 0.784819
Target:  5'- cGCCGCCGcggacgccgacgaUCUccacaGAGUcCCCGuccucGCCGGGGc -3'
miRNA:   3'- -CGGUGGU-------------AGA-----CUCAcGGGU-----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 3830 0.68 0.776599
Target:  5'- uGCUGgCGgggCUgGAGgGCCCGgaGCCGGGGa -3'
miRNA:   3'- -CGGUgGUa--GA-CUCaCGGGU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 56107 0.68 0.776599
Target:  5'- cGCCGCCG-C----UGCCUcGCCGGGGa -3'
miRNA:   3'- -CGGUGGUaGacucACGGGuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 141864 0.68 0.757978
Target:  5'- cGCCgcGCCcUCUG-GUGCCgGaggGCCGGGc -3'
miRNA:   3'- -CGG--UGGuAGACuCACGGgU---UGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 55455 0.68 0.757035
Target:  5'- cGCCGCCG-------GCCCcGCCGGGGg -3'
miRNA:   3'- -CGGUGGUagacucaCGGGuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 71238 0.68 0.748501
Target:  5'- cGCCGaccCCGUC-GAGUaccugaacGCCCAGCuCGGGa -3'
miRNA:   3'- -CGGU---GGUAGaCUCA--------CGGGUUG-GCCCc -5'
29482 5' -57.5 NC_006151.1 + 21375 0.68 0.738924
Target:  5'- gGCCACCcgCUGGGcacgaCGGCCGGcGGg -3'
miRNA:   3'- -CGGUGGuaGACUCacgg-GUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 39378 0.68 0.738924
Target:  5'- -aCACCAUCgagGAcuggcccgcGgacgGCCCGGCCGuGGGg -3'
miRNA:   3'- cgGUGGUAGa--CU---------Ca---CGGGUUGGC-CCC- -5'
29482 5' -57.5 NC_006151.1 + 130908 0.68 0.729257
Target:  5'- cGUCGCCGUCgucGGUgGCCgGGCCcgcGGGGg -3'
miRNA:   3'- -CGGUGGUAGac-UCA-CGGgUUGG---CCCC- -5'
29482 5' -57.5 NC_006151.1 + 89771 0.68 0.729257
Target:  5'- cCCACCAUCUGGGaGaCCAuccACUGGaGGg -3'
miRNA:   3'- cGGUGGUAGACUCaCgGGU---UGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 5924 0.69 0.719508
Target:  5'- gGCgGCCGgggCccgGAGccgGCCCGggACCGGGGc -3'
miRNA:   3'- -CGgUGGUa--Ga--CUCa--CGGGU--UGGCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.