miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 24868 0.66 0.845387
Target:  5'- aCCACCGUgUccgccucGCCCGGCCGGcGGg -3'
miRNA:   3'- cGGUGGUAgAcuca---CGGGUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 36115 0.66 0.845387
Target:  5'- gGCCGCCGUCcucgcgGCCgCGGCCGGa- -3'
miRNA:   3'- -CGGUGGUAGacuca-CGG-GUUGGCCcc -5'
29482 5' -57.5 NC_006151.1 + 1797 0.66 0.853214
Target:  5'- gGCCACCGggCcGGGgagGCaggcGCCGGGGa -3'
miRNA:   3'- -CGGUGGUa-GaCUCa--CGggu-UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 29756 0.66 0.853214
Target:  5'- -aCACUcUCUGuGUGUgCAcacgggACCGGGGa -3'
miRNA:   3'- cgGUGGuAGACuCACGgGU------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 113085 0.66 0.860846
Target:  5'- cGCgGCCGUCgcc--GCCgCcACCGGGGg -3'
miRNA:   3'- -CGgUGGUAGacucaCGG-GuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 9035 0.67 0.820802
Target:  5'- cCCGCCcgCcgGGGcGCCCcgcgugcuCCGGGGg -3'
miRNA:   3'- cGGUGGuaGa-CUCaCGGGuu------GGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 26230 0.67 0.820802
Target:  5'- gGCCGCCGUguuuaUUGAGgGCaCAACagaGGGGa -3'
miRNA:   3'- -CGGUGGUA-----GACUCaCGgGUUGg--CCCC- -5'
29482 5' -57.5 NC_006151.1 + 132845 0.67 0.785725
Target:  5'- gGCCACCAc--GGGcgGCCgGcCCGGGGc -3'
miRNA:   3'- -CGGUGGUagaCUCa-CGGgUuGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 69903 0.67 0.789339
Target:  5'- cGCCGCCGUCgugaagccgucaaagUGGGcGCCgAgcGCCaGGGGc -3'
miRNA:   3'- -CGGUGGUAG---------------ACUCaCGGgU--UGG-CCCC- -5'
29482 5' -57.5 NC_006151.1 + 4181 0.67 0.794717
Target:  5'- cGCgGCCGUCaccuccucGAGgcaggcggGCCCGagggcgGCCGGGGc -3'
miRNA:   3'- -CGgUGGUAGa-------CUCa-------CGGGU------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 78662 0.67 0.798274
Target:  5'- gGCgGCCGgggCgcGGGUGCuggacgggcucuacgCCGGCCGGGGc -3'
miRNA:   3'- -CGgUGGUa--Ga-CUCACG---------------GGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 80673 0.67 0.803566
Target:  5'- cGCaCGCagagaGUCUGGGUucgcgGCCCGGCgCGGGc -3'
miRNA:   3'- -CG-GUGg----UAGACUCA-----CGGGUUG-GCCCc -5'
29482 5' -57.5 NC_006151.1 + 121331 0.67 0.803566
Target:  5'- gGCCGCCGagCUG-GUGCgCGACCucgaGGGc -3'
miRNA:   3'- -CGGUGGUa-GACuCACGgGUUGGc---CCC- -5'
29482 5' -57.5 NC_006151.1 + 138628 0.67 0.803566
Target:  5'- cGCCGCCGg--GGGcgcGCCgGACUGGGa -3'
miRNA:   3'- -CGGUGGUagaCUCa--CGGgUUGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 3718 0.67 0.812264
Target:  5'- cGCCGCuCGggcgCUGGGU-CCgGGCCGGcGGc -3'
miRNA:   3'- -CGGUG-GUa---GACUCAcGGgUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 11995 0.67 0.812264
Target:  5'- cGCCGCUGUCUGuGGcGCCCGucgucucucccGCCGGc- -3'
miRNA:   3'- -CGGUGGUAGAC-UCaCGGGU-----------UGGCCcc -5'
29482 5' -57.5 NC_006151.1 + 99669 0.67 0.812264
Target:  5'- cGCagaGCCG-CUGGG-GCCUGcgcgccgacggcGCCGGGGa -3'
miRNA:   3'- -CGg--UGGUaGACUCaCGGGU------------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 133610 0.67 0.812264
Target:  5'- gGCCGaggggCGUCUGGGgGUCgcggCGGCCGGGGc -3'
miRNA:   3'- -CGGUg----GUAGACUCaCGG----GUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 646 0.67 0.812264
Target:  5'- cGCCGgCuUCcGGG-GCgCGGCCGGGGc -3'
miRNA:   3'- -CGGUgGuAGaCUCaCGgGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 40041 0.67 0.818258
Target:  5'- cGCCGCCGggggCgccgugGAGacccaccgGCCCGcgggggccucgggcGCCGGGGc -3'
miRNA:   3'- -CGGUGGUa---Ga-----CUCa-------CGGGU--------------UGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.