miRNA display CGI


Results 81 - 100 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 50340 0.68 0.589156
Target:  5'- cGGCGCcUGGCCGcGGCCucccgccGCgUCUCCg -3'
miRNA:   3'- -UCGCGcACUGGCuCCGGua-----CG-AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 134119 0.68 0.600048
Target:  5'- uGGUGUGccgGAguCCGGGGCCGgagggauuuuauaagGUUCCCCu -3'
miRNA:   3'- -UCGCGCa--CU--GGCUCCGGUa--------------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 102416 0.68 0.599056
Target:  5'- cGCGCGgcccgcGAaCGAGGCCAUGCaCCg- -3'
miRNA:   3'- uCGCGCa-----CUgGCUCCGGUACGaGGgg -5'
29484 3' -60.7 NC_006151.1 + 140045 0.68 0.599056
Target:  5'- aGGUGCGgccgcacgccACCGAGGCggcgcgCGUGCUCCgCg -3'
miRNA:   3'- -UCGCGCac--------UGGCUCCG------GUACGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 117763 0.68 0.599056
Target:  5'- aAGCGCc-GGCCGAGGUauagGCUCCg- -3'
miRNA:   3'- -UCGCGcaCUGGCUCCGgua-CGAGGgg -5'
29484 3' -60.7 NC_006151.1 + 19280 0.68 0.599056
Target:  5'- cGCGCGgggcccACCGGGGCCAgcgGCgcgggcggccggUCgCCCa -3'
miRNA:   3'- uCGCGCac----UGGCUCCGGUa--CG------------AG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 12762 0.68 0.599056
Target:  5'- gAGgGC-UGGCuCGAGGCCA-GCgcgCCCUu -3'
miRNA:   3'- -UCgCGcACUG-GCUCCGGUaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 120280 0.68 0.599056
Target:  5'- gAGCuGCGUGucaagaGCCG-GGUCAUGUUCUCg -3'
miRNA:   3'- -UCG-CGCAC------UGGCuCCGGUACGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 112710 0.68 0.599056
Target:  5'- cGGCGCuGUGcGCCaAGGCCcuggccUGCcCCCCg -3'
miRNA:   3'- -UCGCG-CAC-UGGcUCCGGu-----ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 80333 0.68 0.599056
Target:  5'- uGgGgG-GACCGGGGCgAgggcgGCUCUCCg -3'
miRNA:   3'- uCgCgCaCUGGCUCCGgUa----CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 74143 0.68 0.589156
Target:  5'- cAGCGgGUG-CCGGGGgucguCCGUGCccaccUCCUCg -3'
miRNA:   3'- -UCGCgCACuGGCUCC-----GGUACG-----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 8356 0.68 0.589156
Target:  5'- cGGaCGCGgaGGCgCGAGGCCcccGC-CCCCg -3'
miRNA:   3'- -UC-GCGCa-CUG-GCUCCGGua-CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 66552 0.68 0.589156
Target:  5'- cGCGCGcGGCCGcgccGCCGUGgaCCCg -3'
miRNA:   3'- uCGCGCaCUGGCuc--CGGUACgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 135957 0.68 0.593113
Target:  5'- cGGCGCGgGACguccuCGAGGCCAUGgacgaggcggccaccUUCgCCCu -3'
miRNA:   3'- -UCGCGCaCUG-----GCUCCGGUAC---------------GAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 131026 0.68 0.596083
Target:  5'- uAGCGgGUGAaggccucccgcucgUCGGGGCCGgagGCcgUCUCCa -3'
miRNA:   3'- -UCGCgCACU--------------GGCUCCGGUa--CG--AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 17402 0.68 0.598065
Target:  5'- gGGCGCGUGGCgCGcggcagcaGGGCCA-GCgagccgggggcgaUCUCCg -3'
miRNA:   3'- -UCGCGCACUG-GC--------UCCGGUaCG-------------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 28276 0.69 0.540218
Target:  5'- gGGCccCGggGACgCG-GGCCcgGCUCCCCc -3'
miRNA:   3'- -UCGc-GCa-CUG-GCuCCGGuaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 126281 0.69 0.540218
Target:  5'- aGGCGaCGUGGaCGAGGCCAaGCUggaccaggCCCg -3'
miRNA:   3'- -UCGC-GCACUgGCUCCGGUaCGA--------GGGg -5'
29484 3' -60.7 NC_006151.1 + 10992 0.69 0.540218
Target:  5'- uGGaGCG-GGCCGGGGgcCCcgGCUCgCCCg -3'
miRNA:   3'- -UCgCGCaCUGGCUCC--GGuaCGAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 44929 0.69 0.537322
Target:  5'- uGCGCGUaaaGugCGAGGCCcacucgacccccccgGCUCgCCu -3'
miRNA:   3'- uCGCGCA---CugGCUCCGGua-------------CGAGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.