miRNA display CGI


Results 101 - 120 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 69644 0.69 0.50208
Target:  5'- cGCGCGUGcggcGCCGccGGGUCGUcgaaGC-CCCCg -3'
miRNA:   3'- uCGCGCAC----UGGC--UCCGGUA----CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 22790 0.69 0.50208
Target:  5'- cGCGCacGUG-CUG-GGCCGU-CUCCCCg -3'
miRNA:   3'- uCGCG--CACuGGCuCCGGUAcGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 13026 0.69 0.50208
Target:  5'- cGGgGCGcGGCCGAcccGGCgGUGacccaUCCCCa -3'
miRNA:   3'- -UCgCGCaCUGGCU---CCGgUACg----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 2604 0.69 0.50208
Target:  5'- cGCGCGgcggcagcggGACCGGGGUCcgGggCCCg -3'
miRNA:   3'- uCGCGCa---------CUGGCUCCGGuaCgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 124987 0.69 0.492726
Target:  5'- cAGCGCGUGcACCuGGGCgAcUGCgUCCuCCg -3'
miRNA:   3'- -UCGCGCAC-UGGcUCCGgU-ACG-AGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 105801 0.69 0.492726
Target:  5'- aGGCGCGgagcGACgCGGacGCgGUGUUCCCCa -3'
miRNA:   3'- -UCGCGCa---CUG-GCUc-CGgUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 27562 0.69 0.524834
Target:  5'- uGgGCuggGACgGGGGCCGggugggugggcgagGCUCCCCg -3'
miRNA:   3'- uCgCGca-CUGgCUCCGGUa-------------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 38577 0.69 0.530584
Target:  5'- cGCGCGc--CCGGGGCCc-GCcgCCCCg -3'
miRNA:   3'- uCGCGCacuGGCUCCGGuaCGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 124876 0.69 0.530584
Target:  5'- uGGCGCGaGGCCGAGGagAUGa--CCCg -3'
miRNA:   3'- -UCGCGCaCUGGCUCCggUACgagGGG- -5'
29484 3' -60.7 NC_006151.1 + 39928 0.69 0.540218
Target:  5'- gAGCcCGacGCCGAGGCCGccccgcuggUGCUgaCCCCg -3'
miRNA:   3'- -UCGcGCacUGGCUCCGGU---------ACGA--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 28276 0.69 0.540218
Target:  5'- gGGCccCGggGACgCG-GGCCcgGCUCCCCc -3'
miRNA:   3'- -UCGc-GCa-CUG-GCuCCGGuaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 126281 0.69 0.540218
Target:  5'- aGGCGaCGUGGaCGAGGCCAaGCUggaccaggCCCg -3'
miRNA:   3'- -UCGC-GCACUgGCUCCGGUaCGA--------GGGg -5'
29484 3' -60.7 NC_006151.1 + 10992 0.69 0.540218
Target:  5'- uGGaGCG-GGCCGGGGgcCCcgGCUCgCCCg -3'
miRNA:   3'- -UCgCGCaCUGGCUCC--GGuaCGAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 44929 0.69 0.537322
Target:  5'- uGCGCGUaaaGugCGAGGCCcacucgacccccccgGCUCgCCu -3'
miRNA:   3'- uCGCGCA---CugGCUCCGGua-------------CGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 3894 0.69 0.530584
Target:  5'- cGGCGCuggGACgaCGAGGCCggGCUgCUCg -3'
miRNA:   3'- -UCGCGca-CUG--GCUCCGGuaCGAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 139308 0.69 0.530584
Target:  5'- cGGCGCGUGcuGCuCGA--CCGUGCUCgCCg -3'
miRNA:   3'- -UCGCGCAC--UG-GCUccGGUACGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 129763 0.69 0.530584
Target:  5'- cAGCGCGaaGGCgaCGAGGgCGUcGCUCCCg -3'
miRNA:   3'- -UCGCGCa-CUG--GCUCCgGUA-CGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 106425 0.69 0.530584
Target:  5'- uGCGCGUcgccgacugGACCGAgGGCC--GCUUCUCg -3'
miRNA:   3'- uCGCGCA---------CUGGCU-CCGGuaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 130958 0.69 0.530584
Target:  5'- cGCGCG-GGCgCGGGGgCcgGUaCCCCg -3'
miRNA:   3'- uCGCGCaCUG-GCUCCgGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 125645 0.7 0.47793
Target:  5'- cGgGCGUGAUCGAgGGCCAgcUcggcgacgacaacgaGCUCCUCa -3'
miRNA:   3'- uCgCGCACUGGCU-CCGGU--A---------------CGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.