miRNA display CGI


Results 121 - 140 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 56633 0.7 0.447245
Target:  5'- uGCGCacgcccgagaUGGCCGAGGCCGUGUaCCgCu -3'
miRNA:   3'- uCGCGc---------ACUGGCUCCGGUACGaGGgG- -5'
29484 3' -60.7 NC_006151.1 + 137773 0.7 0.447245
Target:  5'- cGCGCGUGcuCCaGcAGGCCGUGCUgCUg -3'
miRNA:   3'- uCGCGCACu-GG-C-UCCGGUACGAgGGg -5'
29484 3' -60.7 NC_006151.1 + 133162 0.7 0.447245
Target:  5'- cGGCGCGggcgugGGCCucGGCCAcGCgUCCCa -3'
miRNA:   3'- -UCGCGCa-----CUGGcuCCGGUaCG-AGGGg -5'
29484 3' -60.7 NC_006151.1 + 83445 0.7 0.437553
Target:  5'- gGGCaGCGUGGCCGccAGGCCcacgaagGCcgccgcgcugaugUCCCCg -3'
miRNA:   3'- -UCG-CGCACUGGC--UCCGGua-----CG-------------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 105689 0.7 0.456158
Target:  5'- cGGCGCGgGGCCGAcgccggcgcGGCCGcGCgCCUCg -3'
miRNA:   3'- -UCGCGCaCUGGCU---------CCGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 8824 0.7 0.474266
Target:  5'- cGCGUGUGugCGcGcGCCu--CUCCCCg -3'
miRNA:   3'- uCGCGCACugGCuC-CGGuacGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 28833 0.7 0.474266
Target:  5'- uGCGgGccccgggGACgCG-GGCCcgGCUCCCCc -3'
miRNA:   3'- uCGCgCa------CUG-GCuCCGGuaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 74539 0.7 0.483453
Target:  5'- cAGCGCGUGGuugagcuccucCUGGGGCUgguUGCccagcgggUCCCCg -3'
miRNA:   3'- -UCGCGCACU-----------GGCUCCGGu--ACG--------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 125645 0.7 0.47793
Target:  5'- cGgGCGUGAUCGAgGGCCAgcUcggcgacgacaacgaGCUCCUCa -3'
miRNA:   3'- uCgCGCACUGGCU-CCGGU--A---------------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 97911 0.7 0.474266
Target:  5'- aGGCGCGgaUGccgucgccGCCGAGGCCGcGCccgCCCUc -3'
miRNA:   3'- -UCGCGC--AC--------UGGCUCCGGUaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 20155 0.7 0.474266
Target:  5'- cGGCGCGUgGACCGccGGGCC--GCgCCCg -3'
miRNA:   3'- -UCGCGCA-CUGGC--UCCGGuaCGaGGGg -5'
29484 3' -60.7 NC_006151.1 + 83321 0.7 0.474266
Target:  5'- uGCGCaG-GGCCGugagcAGGCgcgcguccaCGUGCUCCCCg -3'
miRNA:   3'- uCGCG-CaCUGGC-----UCCG---------GUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 58853 0.71 0.40754
Target:  5'- cAGCGCGUGgagcucgcccggcgcGCCGgguccguccAGGCCGUGUagaUCCCg -3'
miRNA:   3'- -UCGCGCAC---------------UGGC---------UCCGGUACG---AGGGg -5'
29484 3' -60.7 NC_006151.1 + 79104 0.71 0.412594
Target:  5'- gAGCGCcccuccgucGUGGCUG-GGCCAcgGCcgCCCCa -3'
miRNA:   3'- -UCGCG---------CACUGGCuCCGGUa-CGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 84314 0.71 0.412594
Target:  5'- gAGCGCGaUGGCCGcGaCCGUGCgcggCCUCg -3'
miRNA:   3'- -UCGCGC-ACUGGCuCcGGUACGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 78167 0.71 0.421101
Target:  5'- cGC-CGUGGUCGAGGCCGUG-UCCgCCg -3'
miRNA:   3'- uCGcGCACUGGCUCCGGUACgAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 61476 0.71 0.421101
Target:  5'- cGCGCaacGCCGAGGCCGUgagcuggcGCUCCUg -3'
miRNA:   3'- uCGCGcacUGGCUCCGGUA--------CGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 73966 0.71 0.421101
Target:  5'- -cCGCGUGgccACCGuGGCCAUGC-CCgCg -3'
miRNA:   3'- ucGCGCAC---UGGCuCCGGUACGaGGgG- -5'
29484 3' -60.7 NC_006151.1 + 132853 0.71 0.429714
Target:  5'- cGgGCGgccgGcCCGGGGCCGcGCcCCCCa -3'
miRNA:   3'- uCgCGCa---CuGGCUCCGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 39672 0.71 0.404193
Target:  5'- cGCGCGccuACCGccaGCgCGUGCUCCCCa -3'
miRNA:   3'- uCGCGCac-UGGCuc-CG-GUACGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.