miRNA display CGI


Results 61 - 80 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 102232 0.69 0.521013
Target:  5'- aGGCGcCGUGcGCCGucGCCGcGCUCUUCg -3'
miRNA:   3'- -UCGC-GCAC-UGGCucCGGUaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 139308 0.69 0.530584
Target:  5'- cGGCGCGUGcuGCuCGA--CCGUGCUCgCCg -3'
miRNA:   3'- -UCGCGCAC--UG-GCUccGGUACGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 3894 0.69 0.530584
Target:  5'- cGGCGCuggGACgaCGAGGCCggGCUgCUCg -3'
miRNA:   3'- -UCGCGca-CUG--GCUCCGGuaCGAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 10992 0.69 0.540218
Target:  5'- uGGaGCG-GGCCGGGGgcCCcgGCUCgCCCg -3'
miRNA:   3'- -UCgCGCaCUGGCUCC--GGuaCGAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 44929 0.69 0.537322
Target:  5'- uGCGCGUaaaGugCGAGGCCcacucgacccccccgGCUCgCCu -3'
miRNA:   3'- uCGCGCA---CugGCUCCGGua-------------CGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 106425 0.69 0.530584
Target:  5'- uGCGCGUcgccgacugGACCGAgGGCC--GCUUCUCg -3'
miRNA:   3'- uCGCGCA---------CUGGCU-CCGGuaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 13026 0.69 0.50208
Target:  5'- cGGgGCGcGGCCGAcccGGCgGUGacccaUCCCCa -3'
miRNA:   3'- -UCgCGCaCUGGCU---CCGgUACg----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 105801 0.69 0.492726
Target:  5'- aGGCGCGgagcGACgCGGacGCgGUGUUCCCCa -3'
miRNA:   3'- -UCGCGCa---CUG-GCUc-CGgUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 124987 0.69 0.492726
Target:  5'- cAGCGCGUGcACCuGGGCgAcUGCgUCCuCCg -3'
miRNA:   3'- -UCGCGCAC-UGGcUCCGgU-ACG-AGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 2604 0.69 0.50208
Target:  5'- cGCGCGgcggcagcggGACCGGGGUCcgGggCCCg -3'
miRNA:   3'- uCGCGCa---------CUGGCUCCGGuaCgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 22790 0.69 0.50208
Target:  5'- cGCGCacGUG-CUG-GGCCGU-CUCCCCg -3'
miRNA:   3'- uCGCG--CACuGGCuCCGGUAcGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 4602 0.69 0.51151
Target:  5'- gAGC-CGUGGCCGugGGGCgCGUGgaCCCg -3'
miRNA:   3'- -UCGcGCACUGGC--UCCG-GUACgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 39791 0.69 0.51151
Target:  5'- cGCGCGgccaACCGcuggGGGCUcgGCgCCCCg -3'
miRNA:   3'- uCGCGCac--UGGC----UCCGGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 27562 0.69 0.524834
Target:  5'- uGgGCuggGACgGGGGCCGggugggugggcgagGCUCCCCg -3'
miRNA:   3'- uCgCGca-CUGgCUCCGGUa-------------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 38577 0.69 0.530584
Target:  5'- cGCGCGc--CCGGGGCCc-GCcgCCCCg -3'
miRNA:   3'- uCGCGCacuGGCUCCGGuaCGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 130958 0.69 0.530584
Target:  5'- cGCGCG-GGCgCGGGGgCcgGUaCCCCg -3'
miRNA:   3'- uCGCGCaCUG-GCUCCgGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 13984 0.68 0.559657
Target:  5'- gGGCccGCGUccCCGGGGCCcacGUGUgaggCCCCg -3'
miRNA:   3'- -UCG--CGCAcuGGCUCCGG---UACGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 65339 0.68 0.549911
Target:  5'- gAGCGCGcGGCCGA-GCUcgGUgaagacgcgCCCCa -3'
miRNA:   3'- -UCGCGCaCUGGCUcCGGuaCGa--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 74882 0.68 0.559657
Target:  5'- cGGCcacCGUGGCCGGGGCCAgccgaUGCcggUCCa -3'
miRNA:   3'- -UCGc--GCACUGGCUCCGGU-----ACGa--GGGg -5'
29484 3' -60.7 NC_006151.1 + 131231 0.68 0.549911
Target:  5'- -aCGCGUcGCCGucGGCCGccacguacaGCUCCCCg -3'
miRNA:   3'- ucGCGCAcUGGCu-CCGGUa--------CGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.