miRNA display CGI


Results 101 - 120 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 31256 0.68 0.579285
Target:  5'- gGGCGgGcGAgCCGGGGCCcccggcccGCUCCaCCg -3'
miRNA:   3'- -UCGCgCaCU-GGCUCCGGua------CGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 3577 0.68 0.579285
Target:  5'- cGGCGCuUGcGCCGGGGCCcccGgUCCUCu -3'
miRNA:   3'- -UCGCGcAC-UGGCUCCGGua-CgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 89327 0.68 0.576331
Target:  5'- -aCGCGcGAgCGAGGCCAUggcgcgugcgaaugGCcCCCCg -3'
miRNA:   3'- ucGCGCaCUgGCUCCGGUA--------------CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 55437 0.68 0.56945
Target:  5'- gGGCGCGgacggGACCGGcGCCGccggCCCCg -3'
miRNA:   3'- -UCGCGCa----CUGGCUcCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 135957 0.68 0.593113
Target:  5'- cGGCGCGgGACguccuCGAGGCCAUGgacgaggcggccaccUUCgCCCu -3'
miRNA:   3'- -UCGCGCaCUG-----GCUCCGGUAC---------------GAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 99466 0.68 0.56945
Target:  5'- cGGgGaCGUGACgGcGGCgCugggGCUCCCCg -3'
miRNA:   3'- -UCgC-GCACUGgCuCCG-Gua--CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 90664 0.68 0.56945
Target:  5'- uGCGCGgGGCgGcGGGCCGcuUGUcCCCCg -3'
miRNA:   3'- uCGCGCaCUGgC-UCCGGU--ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 33267 0.68 0.56945
Target:  5'- gGGCG-GUGGCgGcGGCCAUcGCccgacccuUCCCCg -3'
miRNA:   3'- -UCGCgCACUGgCuCCGGUA-CG--------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 96741 0.68 0.559657
Target:  5'- gGGCGCGacGACgGAGGCCAuggcggcgugUGCUCg-- -3'
miRNA:   3'- -UCGCGCa-CUGgCUCCGGU----------ACGAGggg -5'
29484 3' -60.7 NC_006151.1 + 3945 0.67 0.628868
Target:  5'- gGGCGCGggcuccgcgGGCCcGGGCCGcGCggcggCCUCg -3'
miRNA:   3'- -UCGCGCa--------CUGGcUCCGGUaCGa----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 14064 0.67 0.628868
Target:  5'- gGGUGCGUGGCgGcccGGCCGacgGCacucgccgCCCCa -3'
miRNA:   3'- -UCGCGCACUGgCu--CCGGUa--CGa-------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 64810 0.67 0.628868
Target:  5'- -uCGCGgaaGCCGGcGGCCA-GCUCCUCc -3'
miRNA:   3'- ucGCGCac-UGGCU-CCGGUaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 81591 0.67 0.628868
Target:  5'- cGCGCGUcGCCGGGGCCGccgGCgCgCa -3'
miRNA:   3'- uCGCGCAcUGGCUCCGGUa--CGaGgGg -5'
29484 3' -60.7 NC_006151.1 + 119005 0.67 0.618919
Target:  5'- cGCGC-UGGaCGAcuGGcCCGUGCUCUCCg -3'
miRNA:   3'- uCGCGcACUgGCU--CC-GGUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 77787 0.67 0.618919
Target:  5'- cGC-CGUGAaCGAGGCC-UGCUUCgCg -3'
miRNA:   3'- uCGcGCACUgGCUCCGGuACGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 11457 0.67 0.618919
Target:  5'- -cCGCGUGcccCCGGGGCCAUcgGCUggaacaCCCUg -3'
miRNA:   3'- ucGCGCACu--GGCUCCGGUA--CGA------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 36576 0.67 0.618919
Target:  5'- cAGCGcCGgcacGGCgGGGGCCc-GCUuCCCCa -3'
miRNA:   3'- -UCGC-GCa---CUGgCUCCGGuaCGA-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 98575 0.67 0.60898
Target:  5'- uGCGCaccucGGCCGAGuucggccccgacGCCAUGUUCCgCCu -3'
miRNA:   3'- uCGCGca---CUGGCUC------------CGGUACGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 106773 0.67 0.606
Target:  5'- cGCGCGUGagcgccuggaccugGCCGcggcGGCgGUGCUcgucggggCCCCg -3'
miRNA:   3'- uCGCGCAC--------------UGGCu---CCGgUACGA--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 118798 0.67 0.61196
Target:  5'- cGGCGCGgcgcaccUGGCCuucgacgagaaccacGAGagcGCCGUGCUgCCCg -3'
miRNA:   3'- -UCGCGC-------ACUGG---------------CUC---CGGUACGAgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.