miRNA display CGI


Results 81 - 100 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 115133 0.68 0.559657
Target:  5'- cGCGCGUGcGCCucGGCCAgcacGCgCCCg -3'
miRNA:   3'- uCGCGCAC-UGGcuCCGGUa---CGaGGGg -5'
29484 3' -60.7 NC_006151.1 + 96741 0.68 0.559657
Target:  5'- gGGCGCGacGACgGAGGCCAuggcggcgugUGCUCg-- -3'
miRNA:   3'- -UCGCGCa-CUGgCUCCGGU----------ACGAGggg -5'
29484 3' -60.7 NC_006151.1 + 59683 0.68 0.559657
Target:  5'- cGCGCGcacgcGCCGAgcacGGCCAggcccacaaacUGCUCCCg -3'
miRNA:   3'- uCGCGCac---UGGCU----CCGGU-----------ACGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 55437 0.68 0.56945
Target:  5'- gGGCGCGgacggGACCGGcGCCGccggCCCCg -3'
miRNA:   3'- -UCGCGCa----CUGGCUcCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 133627 0.68 0.56945
Target:  5'- gGGuCGCGgcGGCCGGGGCgGUGgUCCg- -3'
miRNA:   3'- -UC-GCGCa-CUGGCUCCGgUACgAGGgg -5'
29484 3' -60.7 NC_006151.1 + 99466 0.68 0.56945
Target:  5'- cGGgGaCGUGACgGcGGCgCugggGCUCCCCg -3'
miRNA:   3'- -UCgC-GCACUGgCuCCG-Gua--CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 90664 0.68 0.56945
Target:  5'- uGCGCGgGGCgGcGGGCCGcuUGUcCCCCg -3'
miRNA:   3'- uCGCGCaCUGgC-UCCGGU--ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 33267 0.68 0.56945
Target:  5'- gGGCG-GUGGCgGcGGCCAUcGCccgacccuUCCCCg -3'
miRNA:   3'- -UCGCgCACUGgCuCCGGUA-CG--------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 89327 0.68 0.576331
Target:  5'- -aCGCGcGAgCGAGGCCAUggcgcgugcgaaugGCcCCCCg -3'
miRNA:   3'- ucGCGCaCUgGCUCCGGUA--------------CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 3577 0.68 0.579285
Target:  5'- cGGCGCuUGcGCCGGGGCCcccGgUCCUCu -3'
miRNA:   3'- -UCGCGcAC-UGGCUCCGGua-CgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 115215 0.68 0.579285
Target:  5'- cGCGCGcGAUCGuGGCCGcUGC-CgCCg -3'
miRNA:   3'- uCGCGCaCUGGCuCCGGU-ACGaGgGG- -5'
29484 3' -60.7 NC_006151.1 + 77058 0.68 0.579285
Target:  5'- gAGCGCGagcGCCaGGGCCAggagGCUCaCCa -3'
miRNA:   3'- -UCGCGCac-UGGcUCCGGUa---CGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 31256 0.68 0.579285
Target:  5'- gGGCGgGcGAgCCGGGGCCcccggcccGCUCCaCCg -3'
miRNA:   3'- -UCGCgCaCU-GGCUCCGGua------CGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 8356 0.68 0.589156
Target:  5'- cGGaCGCGgaGGCgCGAGGCCcccGC-CCCCg -3'
miRNA:   3'- -UC-GCGCa-CUG-GCUCCGGua-CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 50340 0.68 0.589156
Target:  5'- cGGCGCcUGGCCGcGGCCucccgccGCgUCUCCg -3'
miRNA:   3'- -UCGCGcACUGGCuCCGGua-----CG-AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 66552 0.68 0.589156
Target:  5'- cGCGCGcGGCCGcgccGCCGUGgaCCCg -3'
miRNA:   3'- uCGCGCaCUGGCuc--CGGUACgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 74143 0.68 0.589156
Target:  5'- cAGCGgGUG-CCGGGGgucguCCGUGCccaccUCCUCg -3'
miRNA:   3'- -UCGCgCACuGGCUCC-----GGUACG-----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 135957 0.68 0.593113
Target:  5'- cGGCGCGgGACguccuCGAGGCCAUGgacgaggcggccaccUUCgCCCu -3'
miRNA:   3'- -UCGCGCaCUG-----GCUCCGGUAC---------------GAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 131026 0.68 0.596083
Target:  5'- uAGCGgGUGAaggccucccgcucgUCGGGGCCGgagGCcgUCUCCa -3'
miRNA:   3'- -UCGCgCACU--------------GGCUCCGGUa--CG--AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 17402 0.68 0.598065
Target:  5'- gGGCGCGUGGCgCGcggcagcaGGGCCA-GCgagccgggggcgaUCUCCg -3'
miRNA:   3'- -UCGCGCACUG-GC--------UCCGGUaCG-------------AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.