miRNA display CGI


Results 101 - 120 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 80333 0.68 0.599056
Target:  5'- uGgGgG-GACCGGGGCgAgggcgGCUCUCCg -3'
miRNA:   3'- uCgCgCaCUGGCUCCGgUa----CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 120280 0.68 0.599056
Target:  5'- gAGCuGCGUGucaagaGCCG-GGUCAUGUUCUCg -3'
miRNA:   3'- -UCG-CGCAC------UGGCuCCGGUACGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 102416 0.68 0.599056
Target:  5'- cGCGCGgcccgcGAaCGAGGCCAUGCaCCg- -3'
miRNA:   3'- uCGCGCa-----CUgGCUCCGGUACGaGGgg -5'
29484 3' -60.7 NC_006151.1 + 140045 0.68 0.599056
Target:  5'- aGGUGCGgccgcacgccACCGAGGCggcgcgCGUGCUCCgCg -3'
miRNA:   3'- -UCGCGCac--------UGGCUCCG------GUACGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 117763 0.68 0.599056
Target:  5'- aAGCGCc-GGCCGAGGUauagGCUCCg- -3'
miRNA:   3'- -UCGCGcaCUGGCUCCGgua-CGAGGgg -5'
29484 3' -60.7 NC_006151.1 + 19280 0.68 0.599056
Target:  5'- cGCGCGgggcccACCGGGGCCAgcgGCgcgggcggccggUCgCCCa -3'
miRNA:   3'- uCGCGCac----UGGCUCCGGUa--CG------------AG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 12762 0.68 0.599056
Target:  5'- gAGgGC-UGGCuCGAGGCCA-GCgcgCCCUu -3'
miRNA:   3'- -UCgCGcACUG-GCUCCGGUaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 112710 0.68 0.599056
Target:  5'- cGGCGCuGUGcGCCaAGGCCcuggccUGCcCCCCg -3'
miRNA:   3'- -UCGCG-CAC-UGGcUCCGGu-----ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 134119 0.68 0.600048
Target:  5'- uGGUGUGccgGAguCCGGGGCCGgagggauuuuauaagGUUCCCCu -3'
miRNA:   3'- -UCGCGCa--CU--GGCUCCGGUa--------------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 106773 0.67 0.606
Target:  5'- cGCGCGUGagcgccuggaccugGCCGcggcGGCgGUGCUcgucggggCCCCg -3'
miRNA:   3'- uCGCGCAC--------------UGGCu---CCGgUACGA--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 98575 0.67 0.60898
Target:  5'- uGCGCaccucGGCCGAGuucggccccgacGCCAUGUUCCgCCu -3'
miRNA:   3'- uCGCGca---CUGGCUC------------CGGUACGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 118798 0.67 0.61196
Target:  5'- cGGCGCGgcgcaccUGGCCuucgacgagaaccacGAGagcGCCGUGCUgCCCg -3'
miRNA:   3'- -UCGCGC-------ACUGG---------------CUC---CGGUACGAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 77787 0.67 0.618919
Target:  5'- cGC-CGUGAaCGAGGCC-UGCUUCgCg -3'
miRNA:   3'- uCGcGCACUgGCUCCGGuACGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 11457 0.67 0.618919
Target:  5'- -cCGCGUGcccCCGGGGCCAUcgGCUggaacaCCCUg -3'
miRNA:   3'- ucGCGCACu--GGCUCCGGUA--CGA------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 36576 0.67 0.618919
Target:  5'- cAGCGcCGgcacGGCgGGGGCCc-GCUuCCCCa -3'
miRNA:   3'- -UCGC-GCa---CUGgCUCCGGuaCGA-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 119005 0.67 0.618919
Target:  5'- cGCGC-UGGaCGAcuGGcCCGUGCUCUCCg -3'
miRNA:   3'- uCGCGcACUgGCU--CC-GGUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 138556 0.67 0.627873
Target:  5'- gGGCGCGUacuacgcGACCGucGCCc-GCcugCCCCa -3'
miRNA:   3'- -UCGCGCA-------CUGGCucCGGuaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 3945 0.67 0.628868
Target:  5'- gGGCGCGggcuccgcgGGCCcGGGCCGcGCggcggCCUCg -3'
miRNA:   3'- -UCGCGCa--------CUGGcUCCGGUaCGa----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 14064 0.67 0.628868
Target:  5'- gGGUGCGUGGCgGcccGGCCGacgGCacucgccgCCCCa -3'
miRNA:   3'- -UCGCGCACUGgCu--CCGGUa--CGa-------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 64810 0.67 0.628868
Target:  5'- -uCGCGgaaGCCGGcGGCCA-GCUCCUCc -3'
miRNA:   3'- ucGCGCac-UGGCU-CCGGUaCGAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.