miRNA display CGI


Results 61 - 80 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 48922 0.72 0.333647
Target:  5'- cGCuGCcUGACCGAGGagGUGCUgCCCg -3'
miRNA:   3'- uCG-CGcACUGGCUCCggUACGAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 50340 0.68 0.589156
Target:  5'- cGGCGCcUGGCCGcGGCCucccgccGCgUCUCCg -3'
miRNA:   3'- -UCGCGcACUGGCuCCGGua-----CG-AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 50478 0.67 0.63882
Target:  5'- cAGCGCGgcgcGACCGA-GCCGga--CCCCg -3'
miRNA:   3'- -UCGCGCa---CUGGCUcCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 51415 0.67 0.6587
Target:  5'- cAGCGCGUGcacccguCCGuGGCCAUGaCgcggacgCCgCg -3'
miRNA:   3'- -UCGCGCACu------GGCuCCGGUAC-Ga------GGgG- -5'
29484 3' -60.7 NC_006151.1 + 53490 0.72 0.356127
Target:  5'- gAGC-CGUGGCaCGcgaAGGCCAggUGCUCCgCCg -3'
miRNA:   3'- -UCGcGCACUG-GC---UCCGGU--ACGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 55437 0.68 0.56945
Target:  5'- gGGCGCGgacggGACCGGcGCCGccggCCCCg -3'
miRNA:   3'- -UCGCGCa----CUGGCUcCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 56633 0.7 0.447245
Target:  5'- uGCGCacgcccgagaUGGCCGAGGCCGUGUaCCgCu -3'
miRNA:   3'- uCGCGc---------ACUGGCUCCGGUACGaGGgG- -5'
29484 3' -60.7 NC_006151.1 + 57537 0.66 0.70791
Target:  5'- cGGCGCGgccgcgGGCaCGucGCCGaGCacgCCCCa -3'
miRNA:   3'- -UCGCGCa-----CUG-GCucCGGUaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 57590 0.66 0.70791
Target:  5'- aGGCGCacGUGACC-AGGCCGg---CCUCg -3'
miRNA:   3'- -UCGCG--CACUGGcUCCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 58660 0.66 0.665643
Target:  5'- gGGCGCGgcgcagggccgccaUGACCGc-GCCGUGCgcgCCgCg -3'
miRNA:   3'- -UCGCGC--------------ACUGGCucCGGUACGa--GGgG- -5'
29484 3' -60.7 NC_006151.1 + 58853 0.71 0.40754
Target:  5'- cAGCGCGUGgagcucgcccggcgcGCCGgguccguccAGGCCGUGUagaUCCCg -3'
miRNA:   3'- -UCGCGCAC---------------UGGC---------UCCGGUACG---AGGGg -5'
29484 3' -60.7 NC_006151.1 + 59683 0.68 0.559657
Target:  5'- cGCGCGcacgcGCCGAgcacGGCCAggcccacaaacUGCUCCCg -3'
miRNA:   3'- uCGCGCac---UGGCU----CCGGU-----------ACGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 60558 0.66 0.677513
Target:  5'- aGGCGCGcGcCCagGAGGCCGaagaagcUGUcCCCCg -3'
miRNA:   3'- -UCGCGCaCuGG--CUCCGGU-------ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 61476 0.71 0.421101
Target:  5'- cGCGCaacGCCGAGGCCGUgagcuggcGCUCCUg -3'
miRNA:   3'- uCGCGcacUGGCUCCGGUA--------CGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 63182 0.67 0.648766
Target:  5'- gGGCGCa----CGGGGCCggGCUCgCCg -3'
miRNA:   3'- -UCGCGcacugGCUCCGGuaCGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 64371 0.66 0.717602
Target:  5'- cAGCGCacGGUCGAGGCCGUgGCcagCCCg -3'
miRNA:   3'- -UCGCGcaCUGGCUCCGGUA-CGa--GGGg -5'
29484 3' -60.7 NC_006151.1 + 64810 0.67 0.628868
Target:  5'- -uCGCGgaaGCCGGcGGCCA-GCUCCUCc -3'
miRNA:   3'- ucGCGCac-UGGCU-CCGGUaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 65339 0.68 0.549911
Target:  5'- gAGCGCGcGGCCGA-GCUcgGUgaagacgcgCCCCa -3'
miRNA:   3'- -UCGCGCaCUGGCUcCGGuaCGa--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 65733 0.67 0.648766
Target:  5'- uGCGCGcGGCCcaggagccggGAGGCCucg-UCCCCg -3'
miRNA:   3'- uCGCGCaCUGG----------CUCCGGuacgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 66552 0.68 0.589156
Target:  5'- cGCGCGcGGCCGcgccGCCGUGgaCCCg -3'
miRNA:   3'- uCGCGCaCUGGCuc--CGGUACgaGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.