Results 101 - 120 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 82675 | 0.67 | 0.648766 |
Target: 5'- cGGCGCGccgcGGgCGAGGgCGgcgGC-CCCCg -3' miRNA: 3'- -UCGCGCa---CUgGCUCCgGUa--CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 83321 | 0.7 | 0.474266 |
Target: 5'- uGCGCaG-GGCCGugagcAGGCgcgcguccaCGUGCUCCCCg -3' miRNA: 3'- uCGCG-CaCUGGC-----UCCG---------GUACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 83445 | 0.7 | 0.437553 |
Target: 5'- gGGCaGCGUGGCCGccAGGCCcacgaagGCcgccgcgcugaugUCCCCg -3' miRNA: 3'- -UCG-CGCACUGGC--UCCGGua-----CG-------------AGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 84175 | 0.71 | 0.379651 |
Target: 5'- cGGCGCGccuccucGCCGccGCCGUGC-CCCCg -3' miRNA: 3'- -UCGCGCac-----UGGCucCGGUACGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 84314 | 0.71 | 0.412594 |
Target: 5'- gAGCGCGaUGGCCGcGaCCGUGCgcggCCUCg -3' miRNA: 3'- -UCGCGC-ACUGGCuCcGGUACGa---GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 84432 | 0.66 | 0.668615 |
Target: 5'- cGCGCGgcGGCgCGcGGcCCAUGUcCCCCc -3' miRNA: 3'- uCGCGCa-CUG-GCuCC-GGUACGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 84473 | 0.74 | 0.278236 |
Target: 5'- cGCGCGUGGuucgccuUCGAGGCCGcUGCgaUCCCg -3' miRNA: 3'- uCGCGCACU-------GGCUCCGGU-ACG--AGGGg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 84719 | 0.79 | 0.128524 |
Target: 5'- gAGCGCGUGGCCGAGGCgcuCGUGgUgCUCg -3' miRNA: 3'- -UCGCGCACUGGCUCCG---GUACgAgGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 85250 | 0.66 | 0.68835 |
Target: 5'- aGGCGC-UGGCCGAGGgCggGCgcaUCUCg -3' miRNA: 3'- -UCGCGcACUGGCUCCgGuaCGa--GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 86170 | 0.72 | 0.333647 |
Target: 5'- cGCGCGaGAUCGuGGCCGccgcgcUGC-CCCCg -3' miRNA: 3'- uCGCGCaCUGGCuCCGGU------ACGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 86297 | 0.71 | 0.429714 |
Target: 5'- cGGCGuCGUcaacuGCCcgcagcugGGGGCCGUGCUCgCCCg -3' miRNA: 3'- -UCGC-GCAc----UGG--------CUCCGGUACGAG-GGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 89327 | 0.68 | 0.576331 |
Target: 5'- -aCGCGcGAgCGAGGCCAUggcgcgugcgaaugGCcCCCCg -3' miRNA: 3'- ucGCGCaCUgGCUCCGGUA--------------CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 90664 | 0.68 | 0.56945 |
Target: 5'- uGCGCGgGGCgGcGGGCCGcuUGUcCCCCg -3' miRNA: 3'- uCGCGCaCUGgC-UCCGGU--ACGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 92143 | 0.71 | 0.399205 |
Target: 5'- cGCGCGgcgccaaggccaucaUGGCCGcGGCCGUGCgCgCCg -3' miRNA: 3'- uCGCGC---------------ACUGGCuCCGGUACGaGgGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 94664 | 0.74 | 0.285309 |
Target: 5'- cAGCGgGUGcCCGGcGGgCA-GCUCCCCg -3' miRNA: 3'- -UCGCgCACuGGCU-CCgGUaCGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 95918 | 0.67 | 0.63882 |
Target: 5'- cGCGCGUGcagucgcCCGAGGgCGUGCgguugaagCUCUg -3' miRNA: 3'- uCGCGCACu------GGCUCCgGUACGa-------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 96741 | 0.68 | 0.559657 |
Target: 5'- gGGCGCGacGACgGAGGCCAuggcggcgugUGCUCg-- -3' miRNA: 3'- -UCGCGCa-CUGgCUCCGGU----------ACGAGggg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 97911 | 0.7 | 0.474266 |
Target: 5'- aGGCGCGgaUGccgucgccGCCGAGGCCGcGCccgCCCUc -3' miRNA: 3'- -UCGCGC--AC--------UGGCUCCGGUaCGa--GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 98575 | 0.67 | 0.60898 |
Target: 5'- uGCGCaccucGGCCGAGuucggccccgacGCCAUGUUCCgCCu -3' miRNA: 3'- uCGCGca---CUGGCUC------------CGGUACGAGG-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 99090 | 0.66 | 0.684415 |
Target: 5'- uGGCGCGgcgccugcgcacgGACC-AGGgCGUGCUggcgcugcuggaCCCCg -3' miRNA: 3'- -UCGCGCa------------CUGGcUCCgGUACGA------------GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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