miRNA display CGI


Results 121 - 140 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 99252 0.66 0.70791
Target:  5'- aGGCGCucGUGACCGcGGGCUucacGCgCCgCCa -3'
miRNA:   3'- -UCGCG--CACUGGC-UCCGGua--CGaGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 99466 0.68 0.56945
Target:  5'- cGGgGaCGUGACgGcGGCgCugggGCUCCCCg -3'
miRNA:   3'- -UCgC-GCACUGgCuCCG-Gua--CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 99917 0.66 0.698156
Target:  5'- gGGCGCGcGACUacGGCgCcgGCcucaUCCCCa -3'
miRNA:   3'- -UCGCGCaCUGGcuCCG-GuaCG----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 101595 0.66 0.6785
Target:  5'- cAGCGagcucCGgugGGCCGGGGCCuucGUGUUCUUCc -3'
miRNA:   3'- -UCGC-----GCa--CUGGCUCCGG---UACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 101777 0.66 0.711794
Target:  5'- cGCGgGgccCCGGGGCCAUcccguccucgccgucGC-CCCCg -3'
miRNA:   3'- uCGCgCacuGGCUCCGGUA---------------CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 102117 0.76 0.195787
Target:  5'- uGCGCG-GGCCGGaGCC-UGUUCCCCg -3'
miRNA:   3'- uCGCGCaCUGGCUcCGGuACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 102232 0.69 0.521013
Target:  5'- aGGCGcCGUGcGCCGucGCCGcGCUCUUCg -3'
miRNA:   3'- -UCGC-GCAC-UGGCucCGGUaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 102285 0.66 0.698156
Target:  5'- gAGCGCGgcccGGCCGGGGaCUuUGUggCCgCCa -3'
miRNA:   3'- -UCGCGCa---CUGGCUCC-GGuACGa-GG-GG- -5'
29484 3' -60.7 NC_006151.1 + 102416 0.68 0.599056
Target:  5'- cGCGCGgcccgcGAaCGAGGCCAUGCaCCg- -3'
miRNA:   3'- uCGCGCa-----CUgGCUCCGGUACGaGGgg -5'
29484 3' -60.7 NC_006151.1 + 105689 0.7 0.456158
Target:  5'- cGGCGCGgGGCCGAcgccggcgcGGCCGcGCgCCUCg -3'
miRNA:   3'- -UCGCGCaCUGGCU---------CCGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 105801 0.69 0.492726
Target:  5'- aGGCGCGgagcGACgCGGacGCgGUGUUCCCCa -3'
miRNA:   3'- -UCGCGCa---CUG-GCUc-CGgUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 106425 0.69 0.530584
Target:  5'- uGCGCGUcgccgacugGACCGAgGGCC--GCUUCUCg -3'
miRNA:   3'- uCGCGCA---------CUGGCU-CCGGuaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 106773 0.67 0.606
Target:  5'- cGCGCGUGagcgccuggaccugGCCGcggcGGCgGUGCUcgucggggCCCCg -3'
miRNA:   3'- uCGCGCAC--------------UGGCu---CCGgUACGA--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 112710 0.68 0.599056
Target:  5'- cGGCGCuGUGcGCCaAGGCCcuggccUGCcCCCCg -3'
miRNA:   3'- -UCGCG-CAC-UGGcUCCGGu-----ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 113602 0.76 0.200578
Target:  5'- uGCGcCGUGGCCGAGcGCCAgGCggaCCCg -3'
miRNA:   3'- uCGC-GCACUGGCUC-CGGUaCGag-GGG- -5'
29484 3' -60.7 NC_006151.1 + 113698 0.75 0.237031
Target:  5'- gGGCGCGUGugCGGGgaGCUGUGgaCCCUg -3'
miRNA:   3'- -UCGCGCACugGCUC--CGGUACgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 115133 0.68 0.559657
Target:  5'- cGCGCGUGcGCCucGGCCAgcacGCgCCCg -3'
miRNA:   3'- uCGCGCAC-UGGcuCCGGUa---CGaGGGg -5'
29484 3' -60.7 NC_006151.1 + 115215 0.68 0.579285
Target:  5'- cGCGCGcGAUCGuGGCCGcUGC-CgCCg -3'
miRNA:   3'- uCGCGCaCUGGCuCCGGU-ACGaGgGG- -5'
29484 3' -60.7 NC_006151.1 + 115446 0.82 0.08537
Target:  5'- cGCGCGUGAUgcgCGcGGCCAUgaGCUCCCCg -3'
miRNA:   3'- uCGCGCACUG---GCuCCGGUA--CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 117510 0.66 0.698156
Target:  5'- aAGCGCG-GACUcacGGGCCGcucggggGC-CCCCu -3'
miRNA:   3'- -UCGCGCaCUGGc--UCCGGUa------CGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.