Results 41 - 60 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 106425 | 0.69 | 0.530584 |
Target: 5'- uGCGCGUcgccgacugGACCGAgGGCC--GCUUCUCg -3' miRNA: 3'- uCGCGCA---------CUGGCU-CCGGuaCGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 105801 | 0.69 | 0.492726 |
Target: 5'- aGGCGCGgagcGACgCGGacGCgGUGUUCCCCa -3' miRNA: 3'- -UCGCGCa---CUG-GCUc-CGgUACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 105689 | 0.7 | 0.456158 |
Target: 5'- cGGCGCGgGGCCGAcgccggcgcGGCCGcGCgCCUCg -3' miRNA: 3'- -UCGCGCaCUGGCU---------CCGGUaCGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 102416 | 0.68 | 0.599056 |
Target: 5'- cGCGCGgcccgcGAaCGAGGCCAUGCaCCg- -3' miRNA: 3'- uCGCGCa-----CUgGCUCCGGUACGaGGgg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 102285 | 0.66 | 0.698156 |
Target: 5'- gAGCGCGgcccGGCCGGGGaCUuUGUggCCgCCa -3' miRNA: 3'- -UCGCGCa---CUGGCUCC-GGuACGa-GG-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 102232 | 0.69 | 0.521013 |
Target: 5'- aGGCGcCGUGcGCCGucGCCGcGCUCUUCg -3' miRNA: 3'- -UCGC-GCAC-UGGCucCGGUaCGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 102117 | 0.76 | 0.195787 |
Target: 5'- uGCGCG-GGCCGGaGCC-UGUUCCCCg -3' miRNA: 3'- uCGCGCaCUGGCUcCGGuACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 101777 | 0.66 | 0.711794 |
Target: 5'- cGCGgGgccCCGGGGCCAUcccguccucgccgucGC-CCCCg -3' miRNA: 3'- uCGCgCacuGGCUCCGGUA---------------CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 101595 | 0.66 | 0.6785 |
Target: 5'- cAGCGagcucCGgugGGCCGGGGCCuucGUGUUCUUCc -3' miRNA: 3'- -UCGC-----GCa--CUGGCUCCGG---UACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 99917 | 0.66 | 0.698156 |
Target: 5'- gGGCGCGcGACUacGGCgCcgGCcucaUCCCCa -3' miRNA: 3'- -UCGCGCaCUGGcuCCG-GuaCG----AGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 99466 | 0.68 | 0.56945 |
Target: 5'- cGGgGaCGUGACgGcGGCgCugggGCUCCCCg -3' miRNA: 3'- -UCgC-GCACUGgCuCCG-Gua--CGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 99252 | 0.66 | 0.70791 |
Target: 5'- aGGCGCucGUGACCGcGGGCUucacGCgCCgCCa -3' miRNA: 3'- -UCGCG--CACUGGC-UCCGGua--CGaGG-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 99090 | 0.66 | 0.684415 |
Target: 5'- uGGCGCGgcgccugcgcacgGACC-AGGgCGUGCUggcgcugcuggaCCCCg -3' miRNA: 3'- -UCGCGCa------------CUGGcUCCgGUACGA------------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 98575 | 0.67 | 0.60898 |
Target: 5'- uGCGCaccucGGCCGAGuucggccccgacGCCAUGUUCCgCCu -3' miRNA: 3'- uCGCGca---CUGGCUC------------CGGUACGAGG-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 97911 | 0.7 | 0.474266 |
Target: 5'- aGGCGCGgaUGccgucgccGCCGAGGCCGcGCccgCCCUc -3' miRNA: 3'- -UCGCGC--AC--------UGGCUCCGGUaCGa--GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 96741 | 0.68 | 0.559657 |
Target: 5'- gGGCGCGacGACgGAGGCCAuggcggcgugUGCUCg-- -3' miRNA: 3'- -UCGCGCa-CUGgCUCCGGU----------ACGAGggg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 95918 | 0.67 | 0.63882 |
Target: 5'- cGCGCGUGcagucgcCCGAGGgCGUGCgguugaagCUCUg -3' miRNA: 3'- uCGCGCACu------GGCUCCgGUACGa-------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 94664 | 0.74 | 0.285309 |
Target: 5'- cAGCGgGUGcCCGGcGGgCA-GCUCCCCg -3' miRNA: 3'- -UCGCgCACuGGCU-CCgGUaCGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 92143 | 0.71 | 0.399205 |
Target: 5'- cGCGCGgcgccaaggccaucaUGGCCGcGGCCGUGCgCgCCg -3' miRNA: 3'- uCGCGC---------------ACUGGCuCCGGUACGaGgGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 90664 | 0.68 | 0.56945 |
Target: 5'- uGCGCGgGGCgGcGGGCCGcuUGUcCCCCg -3' miRNA: 3'- uCGCGCaCUGgC-UCCGGU--ACGaGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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