miRNA display CGI


Results 61 - 80 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 89327 0.68 0.576331
Target:  5'- -aCGCGcGAgCGAGGCCAUggcgcgugcgaaugGCcCCCCg -3'
miRNA:   3'- ucGCGCaCUgGCUCCGGUA--------------CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 86297 0.71 0.429714
Target:  5'- cGGCGuCGUcaacuGCCcgcagcugGGGGCCGUGCUCgCCCg -3'
miRNA:   3'- -UCGC-GCAc----UGG--------CUCCGGUACGAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 86170 0.72 0.333647
Target:  5'- cGCGCGaGAUCGuGGCCGccgcgcUGC-CCCCg -3'
miRNA:   3'- uCGCGCaCUGGCuCCGGU------ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 85250 0.66 0.68835
Target:  5'- aGGCGC-UGGCCGAGGgCggGCgcaUCUCg -3'
miRNA:   3'- -UCGCGcACUGGCUCCgGuaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 84719 0.79 0.128524
Target:  5'- gAGCGCGUGGCCGAGGCgcuCGUGgUgCUCg -3'
miRNA:   3'- -UCGCGCACUGGCUCCG---GUACgAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 84473 0.74 0.278236
Target:  5'- cGCGCGUGGuucgccuUCGAGGCCGcUGCgaUCCCg -3'
miRNA:   3'- uCGCGCACU-------GGCUCCGGU-ACG--AGGGg -5'
29484 3' -60.7 NC_006151.1 + 84432 0.66 0.668615
Target:  5'- cGCGCGgcGGCgCGcGGcCCAUGUcCCCCc -3'
miRNA:   3'- uCGCGCa-CUG-GCuCC-GGUACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 84314 0.71 0.412594
Target:  5'- gAGCGCGaUGGCCGcGaCCGUGCgcggCCUCg -3'
miRNA:   3'- -UCGCGC-ACUGGCuCcGGUACGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 84175 0.71 0.379651
Target:  5'- cGGCGCGccuccucGCCGccGCCGUGC-CCCCg -3'
miRNA:   3'- -UCGCGCac-----UGGCucCGGUACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 83445 0.7 0.437553
Target:  5'- gGGCaGCGUGGCCGccAGGCCcacgaagGCcgccgcgcugaugUCCCCg -3'
miRNA:   3'- -UCG-CGCACUGGC--UCCGGua-----CG-------------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 83321 0.7 0.474266
Target:  5'- uGCGCaG-GGCCGugagcAGGCgcgcguccaCGUGCUCCCCg -3'
miRNA:   3'- uCGCG-CaCUGGC-----UCCG---------GUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 82675 0.67 0.648766
Target:  5'- cGGCGCGccgcGGgCGAGGgCGgcgGC-CCCCg -3'
miRNA:   3'- -UCGCGCa---CUgGCUCCgGUa--CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 81705 0.66 0.68835
Target:  5'- cGCGCGagguccaGCCGGGGCgCcgGgUCCUCg -3'
miRNA:   3'- uCGCGCac-----UGGCUCCG-GuaCgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 81591 0.67 0.628868
Target:  5'- cGCGCGUcGCCGGGGCCGccgGCgCgCa -3'
miRNA:   3'- uCGCGCAcUGGCUCCGGUa--CGaGgGg -5'
29484 3' -60.7 NC_006151.1 + 81225 0.67 0.63882
Target:  5'- cGGCGCGUGAacaCGAaGCUGgcGC-CCCCg -3'
miRNA:   3'- -UCGCGCACUg--GCUcCGGUa-CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 80333 0.68 0.599056
Target:  5'- uGgGgG-GACCGGGGCgAgggcgGCUCUCCg -3'
miRNA:   3'- uCgCgCaCUGGCUCCGgUa----CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 79104 0.71 0.412594
Target:  5'- gAGCGCcccuccgucGUGGCUG-GGCCAcgGCcgCCCCa -3'
miRNA:   3'- -UCGCG---------CACUGGCuCCGGUa-CGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 78167 0.71 0.421101
Target:  5'- cGC-CGUGGUCGAGGCCGUG-UCCgCCg -3'
miRNA:   3'- uCGcGCACUGGCUCCGGUACgAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 77787 0.67 0.618919
Target:  5'- cGC-CGUGAaCGAGGCC-UGCUUCgCg -3'
miRNA:   3'- uCGcGCACUgGCUCCGGuACGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 77058 0.68 0.579285
Target:  5'- gAGCGCGagcGCCaGGGCCAggagGCUCaCCa -3'
miRNA:   3'- -UCGCGCac-UGGcUCCGGUa---CGAGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.