miRNA display CGI


Results 81 - 100 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 74882 0.68 0.559657
Target:  5'- cGGCcacCGUGGCCGGGGCCAgccgaUGCcggUCCa -3'
miRNA:   3'- -UCGc--GCACUGGCUCCGGU-----ACGa--GGGg -5'
29484 3' -60.7 NC_006151.1 + 74539 0.7 0.483453
Target:  5'- cAGCGCGUGGuugagcuccucCUGGGGCUgguUGCccagcgggUCCCCg -3'
miRNA:   3'- -UCGCGCACU-----------GGCUCCGGu--ACG--------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 74143 0.68 0.589156
Target:  5'- cAGCGgGUG-CCGGGGgucguCCGUGCccaccUCCUCg -3'
miRNA:   3'- -UCGCgCACuGGCUCC-----GGUACG-----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 74015 0.66 0.698156
Target:  5'- aGGgGCGUcGugCGcucGGCCAUGUUCgUCa -3'
miRNA:   3'- -UCgCGCA-CugGCu--CCGGUACGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 73966 0.71 0.421101
Target:  5'- -cCGCGUGgccACCGuGGCCAUGC-CCgCg -3'
miRNA:   3'- ucGCGCAC---UGGCuCCGGUACGaGGgG- -5'
29484 3' -60.7 NC_006151.1 + 73339 0.66 0.68835
Target:  5'- cGCGCGUGGCgaaGAGGUUcUGCggcagguugCCCa -3'
miRNA:   3'- uCGCGCACUGg--CUCCGGuACGa--------GGGg -5'
29484 3' -60.7 NC_006151.1 + 72174 0.67 0.63882
Target:  5'- gAGCaGCGgcgGGaCGAGGCacaCGUGgUCCCCg -3'
miRNA:   3'- -UCG-CGCa--CUgGCUCCG---GUACgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 71707 0.66 0.698156
Target:  5'- cAGcCGCGaGGCCGAGGCgAUccagGC-CUCCa -3'
miRNA:   3'- -UC-GCGCaCUGGCUCCGgUA----CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 71091 0.71 0.38772
Target:  5'- cGGCGCcgcgGGCgCGGGcGCCGUGCgcuaCCCCu -3'
miRNA:   3'- -UCGCGca--CUG-GCUC-CGGUACGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 71051 0.69 0.51151
Target:  5'- cGCGCGUcgucGCCGAcccGGCCGUGgUCUUCu -3'
miRNA:   3'- uCGCGCAc---UGGCU---CCGGUACgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 69644 0.69 0.50208
Target:  5'- cGCGCGUGcggcGCCGccGGGUCGUcgaaGC-CCCCg -3'
miRNA:   3'- uCGCGCAC----UGGC--UCCGGUA----CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 66587 0.67 0.6587
Target:  5'- cGCGCGcGGCCGAGGCgCucgaCUUCgCCg -3'
miRNA:   3'- uCGCGCaCUGGCUCCG-Guac-GAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 66552 0.68 0.589156
Target:  5'- cGCGCGcGGCCGcgccGCCGUGgaCCCg -3'
miRNA:   3'- uCGCGCaCUGGCuc--CGGUACgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 65733 0.67 0.648766
Target:  5'- uGCGCGcGGCCcaggagccggGAGGCCucg-UCCCCg -3'
miRNA:   3'- uCGCGCaCUGG----------CUCCGGuacgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 65339 0.68 0.549911
Target:  5'- gAGCGCGcGGCCGA-GCUcgGUgaagacgcgCCCCa -3'
miRNA:   3'- -UCGCGCaCUGGCUcCGGuaCGa--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 64810 0.67 0.628868
Target:  5'- -uCGCGgaaGCCGGcGGCCA-GCUCCUCc -3'
miRNA:   3'- ucGCGCac-UGGCU-CCGGUaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 64371 0.66 0.717602
Target:  5'- cAGCGCacGGUCGAGGCCGUgGCcagCCCg -3'
miRNA:   3'- -UCGCGcaCUGGCUCCGGUA-CGa--GGGg -5'
29484 3' -60.7 NC_006151.1 + 63182 0.67 0.648766
Target:  5'- gGGCGCa----CGGGGCCggGCUCgCCg -3'
miRNA:   3'- -UCGCGcacugGCUCCGGuaCGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 61476 0.71 0.421101
Target:  5'- cGCGCaacGCCGAGGCCGUgagcuggcGCUCCUg -3'
miRNA:   3'- uCGCGcacUGGCUCCGGUA--------CGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 60558 0.66 0.677513
Target:  5'- aGGCGCGcGcCCagGAGGCCGaagaagcUGUcCCCCg -3'
miRNA:   3'- -UCGCGCaCuGG--CUCCGGU-------ACGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.