miRNA display CGI


Results 101 - 120 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 59683 0.68 0.559657
Target:  5'- cGCGCGcacgcGCCGAgcacGGCCAggcccacaaacUGCUCCCg -3'
miRNA:   3'- uCGCGCac---UGGCU----CCGGU-----------ACGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 58853 0.71 0.40754
Target:  5'- cAGCGCGUGgagcucgcccggcgcGCCGgguccguccAGGCCGUGUagaUCCCg -3'
miRNA:   3'- -UCGCGCAC---------------UGGC---------UCCGGUACG---AGGGg -5'
29484 3' -60.7 NC_006151.1 + 58660 0.66 0.665643
Target:  5'- gGGCGCGgcgcagggccgccaUGACCGc-GCCGUGCgcgCCgCg -3'
miRNA:   3'- -UCGCGC--------------ACUGGCucCGGUACGa--GGgG- -5'
29484 3' -60.7 NC_006151.1 + 57590 0.66 0.70791
Target:  5'- aGGCGCacGUGACC-AGGCCGg---CCUCg -3'
miRNA:   3'- -UCGCG--CACUGGcUCCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 57537 0.66 0.70791
Target:  5'- cGGCGCGgccgcgGGCaCGucGCCGaGCacgCCCCa -3'
miRNA:   3'- -UCGCGCa-----CUG-GCucCGGUaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 56633 0.7 0.447245
Target:  5'- uGCGCacgcccgagaUGGCCGAGGCCGUGUaCCgCu -3'
miRNA:   3'- uCGCGc---------ACUGGCUCCGGUACGaGGgG- -5'
29484 3' -60.7 NC_006151.1 + 55437 0.68 0.56945
Target:  5'- gGGCGCGgacggGACCGGcGCCGccggCCCCg -3'
miRNA:   3'- -UCGCGCa----CUGGCUcCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 53490 0.72 0.356127
Target:  5'- gAGC-CGUGGCaCGcgaAGGCCAggUGCUCCgCCg -3'
miRNA:   3'- -UCGcGCACUG-GC---UCCGGU--ACGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 51415 0.67 0.6587
Target:  5'- cAGCGCGUGcacccguCCGuGGCCAUGaCgcggacgCCgCg -3'
miRNA:   3'- -UCGCGCACu------GGCuCCGGUAC-Ga------GGgG- -5'
29484 3' -60.7 NC_006151.1 + 50478 0.67 0.63882
Target:  5'- cAGCGCGgcgcGACCGA-GCCGga--CCCCg -3'
miRNA:   3'- -UCGCGCa---CUGGCUcCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 50340 0.68 0.589156
Target:  5'- cGGCGCcUGGCCGcGGCCucccgccGCgUCUCCg -3'
miRNA:   3'- -UCGCGcACUGGCuCCGGua-----CG-AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 48922 0.72 0.333647
Target:  5'- cGCuGCcUGACCGAGGagGUGCUgCCCg -3'
miRNA:   3'- uCG-CGcACUGGCUCCggUACGAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 47431 0.67 0.63882
Target:  5'- gAGUGCccaACCGGGGCCcgGCgguuacaucacCCCCa -3'
miRNA:   3'- -UCGCGcacUGGCUCCGGuaCGa----------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 46541 0.73 0.305319
Target:  5'- -cCGCGgacGACCaGAGGCCGgcgcccaggcGCUCCCCg -3'
miRNA:   3'- ucGCGCa--CUGG-CUCCGGUa---------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 46285 1.11 0.000685
Target:  5'- cAGCGCGUGACCGAGGCCAUGCUCCCCa -3'
miRNA:   3'- -UCGCGCACUGGCUCCGGUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 44929 0.69 0.537322
Target:  5'- uGCGCGUaaaGugCGAGGCCcacucgacccccccgGCUCgCCu -3'
miRNA:   3'- uCGCGCA---CugGCUCCGGua-------------CGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 39928 0.69 0.540218
Target:  5'- gAGCcCGacGCCGAGGCCGccccgcuggUGCUgaCCCCg -3'
miRNA:   3'- -UCGcGCacUGGCUCCGGU---------ACGA--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 39791 0.69 0.51151
Target:  5'- cGCGCGgccaACCGcuggGGGCUcgGCgCCCCg -3'
miRNA:   3'- uCGCGCac--UGGC----UCCGGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 39672 0.71 0.404193
Target:  5'- cGCGCGccuACCGccaGCgCGUGCUCCCCa -3'
miRNA:   3'- uCGCGCac-UGGCuc-CG-GUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 39469 0.66 0.717602
Target:  5'- cGUGCGcUGGcCCGGGuGCCGcgaGCUCCgCg -3'
miRNA:   3'- uCGCGC-ACU-GGCUC-CGGUa--CGAGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.