miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 31203 0.66 0.717602
Target:  5'- --aGUGUGGCCcgcguccAGGCCggGC-CCCCg -3'
miRNA:   3'- ucgCGCACUGGc------UCCGGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 39469 0.66 0.717602
Target:  5'- cGUGCGcUGGcCCGGGuGCCGcgaGCUCCgCg -3'
miRNA:   3'- uCGCGC-ACU-GGCUC-CGGUa--CGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 123065 0.66 0.717602
Target:  5'- uGCGCGacGCCGAGcGCCGgcgGCgCCUg -3'
miRNA:   3'- uCGCGCacUGGCUC-CGGUa--CGaGGGg -5'
29484 3' -60.7 NC_006151.1 + 24323 0.66 0.717602
Target:  5'- gGGCGCG-GA-UGAGGUCGaucaggUGCaucUCCCCg -3'
miRNA:   3'- -UCGCGCaCUgGCUCCGGU------ACG---AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 64371 0.66 0.717602
Target:  5'- cAGCGCacGGUCGAGGCCGUgGCcagCCCg -3'
miRNA:   3'- -UCGCGcaCUGGCUCCGGUA-CGa--GGGg -5'
29484 3' -60.7 NC_006151.1 + 74015 0.66 0.698156
Target:  5'- aGGgGCGUcGugCGcucGGCCAUGUUCgUCa -3'
miRNA:   3'- -UCgCGCA-CugGCu--CCGGUACGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 122244 0.66 0.698156
Target:  5'- uGUGCGUGACggccaaccagggCGAGGCCAcgcacaggcgccUGCUCg-- -3'
miRNA:   3'- uCGCGCACUG------------GCUCCGGU------------ACGAGggg -5'
29484 3' -60.7 NC_006151.1 + 5731 0.66 0.6785
Target:  5'- uGGCGCcggGGuCCGAGGCCGcGC-CgCCg -3'
miRNA:   3'- -UCGCGca-CU-GGCUCCGGUaCGaGgGG- -5'
29484 3' -60.7 NC_006151.1 + 23460 0.66 0.6785
Target:  5'- gGGCGgGUGAUCGuGaGcCCGUGCUUCaugCCg -3'
miRNA:   3'- -UCGCgCACUGGCuC-C-GGUACGAGG---GG- -5'
29484 3' -60.7 NC_006151.1 + 28187 0.66 0.6785
Target:  5'- gAGUGcCGUcGGCCGGGccGCCAcGCaCCCCu -3'
miRNA:   3'- -UCGC-GCA-CUGGCUC--CGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 101595 0.66 0.6785
Target:  5'- cAGCGagcucCGgugGGCCGGGGCCuucGUGUUCUUCc -3'
miRNA:   3'- -UCGC-----GCa--CUGGCUCCGG---UACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 99090 0.66 0.684415
Target:  5'- uGGCGCGgcgccugcgcacgGACC-AGGgCGUGCUggcgcugcuggaCCCCg -3'
miRNA:   3'- -UCGCGCa------------CUGGcUCCgGUACGA------------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 73339 0.66 0.68835
Target:  5'- cGCGCGUGGCgaaGAGGUUcUGCggcagguugCCCa -3'
miRNA:   3'- uCGCGCACUGg--CUCCGGuACGa--------GGGg -5'
29484 3' -60.7 NC_006151.1 + 81705 0.66 0.68835
Target:  5'- cGCGCGagguccaGCCGGGGCgCcgGgUCCUCg -3'
miRNA:   3'- uCGCGCac-----UGGCUCCG-GuaCgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 85250 0.66 0.68835
Target:  5'- aGGCGC-UGGCCGAGGgCggGCgcaUCUCg -3'
miRNA:   3'- -UCGCGcACUGGCUCCgGuaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 102285 0.66 0.698156
Target:  5'- gAGCGCGgcccGGCCGGGGaCUuUGUggCCgCCa -3'
miRNA:   3'- -UCGCGCa---CUGGCUCC-GGuACGa-GG-GG- -5'
29484 3' -60.7 NC_006151.1 + 31773 0.66 0.698156
Target:  5'- gGGCGCGc-GCCG-GGCg--GCUCUCCu -3'
miRNA:   3'- -UCGCGCacUGGCuCCGguaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 34014 0.66 0.698156
Target:  5'- cGGCGCGccGGCCc-GGCC---CUCCCCg -3'
miRNA:   3'- -UCGCGCa-CUGGcuCCGGuacGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 71707 0.66 0.698156
Target:  5'- cAGcCGCGaGGCCGAGGCgAUccagGC-CUCCa -3'
miRNA:   3'- -UC-GCGCaCUGGCUCCGgUA----CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 99917 0.66 0.698156
Target:  5'- gGGCGCGcGACUacGGCgCcgGCcucaUCCCCa -3'
miRNA:   3'- -UCGCGCaCUGGcuCCG-GuaCG----AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.