Results 121 - 140 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 19280 | 0.68 | 0.599056 |
Target: 5'- cGCGCGgggcccACCGGGGCCAgcgGCgcgggcggccggUCgCCCa -3' miRNA: 3'- uCGCGCac----UGGCUCCGGUa--CG------------AG-GGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 12762 | 0.68 | 0.599056 |
Target: 5'- gAGgGC-UGGCuCGAGGCCA-GCgcgCCCUu -3' miRNA: 3'- -UCgCGcACUG-GCUCCGGUaCGa--GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 14064 | 0.67 | 0.628868 |
Target: 5'- gGGUGCGUGGCgGcccGGCCGacgGCacucgccgCCCCa -3' miRNA: 3'- -UCGCGCACUGgCu--CCGGUa--CGa-------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 64810 | 0.67 | 0.628868 |
Target: 5'- -uCGCGgaaGCCGGcGGCCA-GCUCCUCc -3' miRNA: 3'- ucGCGCac-UGGCU-CCGGUaCGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 81591 | 0.67 | 0.628868 |
Target: 5'- cGCGCGUcGCCGGGGCCGccgGCgCgCa -3' miRNA: 3'- uCGCGCAcUGGCUCCGGUa--CGaGgGg -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 66587 | 0.67 | 0.6587 |
Target: 5'- cGCGCGcGGCCGAGGCgCucgaCUUCgCCg -3' miRNA: 3'- uCGCGCaCUGGCUCCG-Guac-GAGG-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 137915 | 0.67 | 0.6587 |
Target: 5'- cGGCgGCGgcuGCCacGGGcGCC-UGCUCCCCu -3' miRNA: 3'- -UCG-CGCac-UGG--CUC-CGGuACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 21536 | 0.67 | 0.6587 |
Target: 5'- cGGC-CGgGGCCGGGGCCGggGCcugggCCUCg -3' miRNA: 3'- -UCGcGCaCUGGCUCCGGUa-CGa----GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 18853 | 0.67 | 0.6587 |
Target: 5'- uGGCGaCGUGGCCGuuguGGGUCAUcacgaGCacguacagCCCCg -3' miRNA: 3'- -UCGC-GCACUGGC----UCCGGUA-----CGa-------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 10571 | 0.67 | 0.6587 |
Target: 5'- uGGCGCGgccGGCuCGGcGGCCcgGCccuUCCuCCg -3' miRNA: 3'- -UCGCGCa--CUG-GCU-CCGGuaCG---AGG-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 125463 | 0.67 | 0.648766 |
Target: 5'- cAGCGcCGUGGCCacGGCCGcGCUCggCCa -3' miRNA: 3'- -UCGC-GCACUGGcuCCGGUaCGAGg-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 82675 | 0.67 | 0.648766 |
Target: 5'- cGGCGCGccgcGGgCGAGGgCGgcgGC-CCCCg -3' miRNA: 3'- -UCGCGCa---CUgGCUCCgGUa--CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 63182 | 0.67 | 0.648766 |
Target: 5'- gGGCGCa----CGGGGCCggGCUCgCCg -3' miRNA: 3'- -UCGCGcacugGCUCCGGuaCGAGgGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 65733 | 0.67 | 0.648766 |
Target: 5'- uGCGCGcGGCCcaggagccggGAGGCCucg-UCCCCg -3' miRNA: 3'- uCGCGCaCUGG----------CUCCGGuacgAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 95918 | 0.67 | 0.63882 |
Target: 5'- cGCGCGUGcagucgcCCGAGGgCGUGCgguugaagCUCUg -3' miRNA: 3'- uCGCGCACu------GGCUCCgGUACGa-------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 81225 | 0.67 | 0.63882 |
Target: 5'- cGGCGCGUGAacaCGAaGCUGgcGC-CCCCg -3' miRNA: 3'- -UCGCGCACUg--GCUcCGGUa-CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 50478 | 0.67 | 0.63882 |
Target: 5'- cAGCGCGgcgcGACCGA-GCCGga--CCCCg -3' miRNA: 3'- -UCGCGCa---CUGGCUcCGGUacgaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 72174 | 0.67 | 0.63882 |
Target: 5'- gAGCaGCGgcgGGaCGAGGCacaCGUGgUCCCCg -3' miRNA: 3'- -UCG-CGCa--CUgGCUCCG---GUACgAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 47431 | 0.67 | 0.63882 |
Target: 5'- gAGUGCccaACCGGGGCCcgGCgguuacaucacCCCCa -3' miRNA: 3'- -UCGCGcacUGGCUCCGGuaCGa----------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 125579 | 0.67 | 0.637825 |
Target: 5'- uGCGCGUGcCCGGcgagcgcGGCaCGUGCUacagccgCCCg -3' miRNA: 3'- uCGCGCACuGGCU-------CCG-GUACGAg------GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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