Results 141 - 160 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 118798 | 0.67 | 0.61196 |
Target: 5'- cGGCGCGgcgcaccUGGCCuucgacgagaaccacGAGagcGCCGUGCUgCCCg -3' miRNA: 3'- -UCGCGC-------ACUGG---------------CUC---CGGUACGAgGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 36576 | 0.67 | 0.618919 |
Target: 5'- cAGCGcCGgcacGGCgGGGGCCc-GCUuCCCCa -3' miRNA: 3'- -UCGC-GCa---CUGgCUCCGGuaCGA-GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 72174 | 0.67 | 0.63882 |
Target: 5'- gAGCaGCGgcgGGaCGAGGCacaCGUGgUCCCCg -3' miRNA: 3'- -UCG-CGCa--CUgGCUCCG---GUACgAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 50478 | 0.67 | 0.63882 |
Target: 5'- cAGCGCGgcgcGACCGA-GCCGga--CCCCg -3' miRNA: 3'- -UCGCGCa---CUGGCUcCGGUacgaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 81225 | 0.67 | 0.63882 |
Target: 5'- cGGCGCGUGAacaCGAaGCUGgcGC-CCCCg -3' miRNA: 3'- -UCGCGCACUg--GCUcCGGUa-CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 95918 | 0.67 | 0.63882 |
Target: 5'- cGCGCGUGcagucgcCCGAGGgCGUGCgguugaagCUCUg -3' miRNA: 3'- uCGCGCACu------GGCUCCgGUACGa-------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 65733 | 0.67 | 0.648766 |
Target: 5'- uGCGCGcGGCCcaggagccggGAGGCCucg-UCCCCg -3' miRNA: 3'- uCGCGCaCUGG----------CUCCGGuacgAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 63182 | 0.67 | 0.648766 |
Target: 5'- gGGCGCa----CGGGGCCggGCUCgCCg -3' miRNA: 3'- -UCGCGcacugGCUCCGGuaCGAGgGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 82675 | 0.67 | 0.648766 |
Target: 5'- cGGCGCGccgcGGgCGAGGgCGgcgGC-CCCCg -3' miRNA: 3'- -UCGCGCa---CUgGCUCCgGUa--CGaGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 125463 | 0.67 | 0.648766 |
Target: 5'- cAGCGcCGUGGCCacGGCCGcGCUCggCCa -3' miRNA: 3'- -UCGC-GCACUGGcuCCGGUaCGAGg-GG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 47431 | 0.67 | 0.63882 |
Target: 5'- gAGUGCccaACCGGGGCCcgGCgguuacaucacCCCCa -3' miRNA: 3'- -UCGCGcacUGGCUCCGGuaCGa----------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 125579 | 0.67 | 0.637825 |
Target: 5'- uGCGCGUGcCCGGcgagcgcGGCaCGUGCUacagccgCCCg -3' miRNA: 3'- uCGCGCACuGGCU-------CCG-GUACGAg------GGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 11457 | 0.67 | 0.618919 |
Target: 5'- -cCGCGUGcccCCGGGGCCAUcgGCUggaacaCCCUg -3' miRNA: 3'- ucGCGCACu--GGCUCCGGUA--CGA------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 77787 | 0.67 | 0.618919 |
Target: 5'- cGC-CGUGAaCGAGGCC-UGCUUCgCg -3' miRNA: 3'- uCGcGCACUgGCUCCGGuACGAGGgG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 119005 | 0.67 | 0.618919 |
Target: 5'- cGCGC-UGGaCGAcuGGcCCGUGCUCUCCg -3' miRNA: 3'- uCGCGcACUgGCU--CC-GGUACGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 138556 | 0.67 | 0.627873 |
Target: 5'- gGGCGCGUacuacgcGACCGucGCCc-GCcugCCCCa -3' miRNA: 3'- -UCGCGCA-------CUGGCucCGGuaCGa--GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 3945 | 0.67 | 0.628868 |
Target: 5'- gGGCGCGggcuccgcgGGCCcGGGCCGcGCggcggCCUCg -3' miRNA: 3'- -UCGCGCa--------CUGGcUCCGGUaCGa----GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 14064 | 0.67 | 0.628868 |
Target: 5'- gGGUGCGUGGCgGcccGGCCGacgGCacucgccgCCCCa -3' miRNA: 3'- -UCGCGCACUGgCu--CCGGUa--CGa-------GGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 64810 | 0.67 | 0.628868 |
Target: 5'- -uCGCGgaaGCCGGcGGCCA-GCUCCUCc -3' miRNA: 3'- ucGCGCac-UGGCU-CCGGUaCGAGGGG- -5' |
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29484 | 3' | -60.7 | NC_006151.1 | + | 81591 | 0.67 | 0.628868 |
Target: 5'- cGCGCGUcGCCGGGGCCGccgGCgCgCa -3' miRNA: 3'- uCGCGCAcUGGCUCCGGUa--CGaGgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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