miRNA display CGI


Results 41 - 60 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 5' -63.7 NC_006151.1 + 122939 0.68 0.423335
Target:  5'- cGGACGCCgacggcggcgcCGcGGGGGGcgcggacgccGGCGACGGGg -3'
miRNA:   3'- -UCUGCGG-----------GCaCCUCCC----------CCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 127911 0.68 0.406665
Target:  5'- cGGGgGCCCcucggGGAgcGGGGGCGGCGaGAc -3'
miRNA:   3'- -UCUgCGGGca---CCU--CCCCCGCUGC-CUa -5'
29486 5' -63.7 NC_006151.1 + 20112 0.69 0.399299
Target:  5'- cGGGCGCCCcggcgacggggcugGGGGGcGGGCGccGCGGGg -3'
miRNA:   3'- -UCUGCGGGca------------CCUCC-CCCGC--UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 27630 0.69 0.398486
Target:  5'- cGGcCGCCCcgacgGGuGGGGGUGGCuGGAUg -3'
miRNA:   3'- -UCuGCGGGca---CCuCCCCCGCUG-CCUA- -5'
29486 5' -63.7 NC_006151.1 + 96702 0.69 0.398486
Target:  5'- -uGCGUCCGcgccGGGGGcGGCGGCGGAc -3'
miRNA:   3'- ucUGCGGGCa---CCUCCcCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 26289 0.69 0.390413
Target:  5'- cGGACGgUgggGUGGGGGGGGUGGgGGGa -3'
miRNA:   3'- -UCUGCgGg--CACCUCCCCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 72560 0.69 0.390413
Target:  5'- cGGcCGCgCG-GGAGGGuGGgGGCGGGUg -3'
miRNA:   3'- -UCuGCGgGCaCCUCCC-CCgCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 30957 0.69 0.382448
Target:  5'- cGGCgGCCCG-GGAGaGcGGGCGGgGGAc -3'
miRNA:   3'- uCUG-CGGGCaCCUC-C-CCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 122691 0.69 0.380868
Target:  5'- cGGCGgCCGUGGAGcucgcgcucuucGGGCGGCGGc- -3'
miRNA:   3'- uCUGCgGGCACCUCc-----------CCCGCUGCCua -5'
29486 5' -63.7 NC_006151.1 + 45584 0.69 0.366845
Target:  5'- gGGACgGCCC---GAGGGGGCGGgGGGa -3'
miRNA:   3'- -UCUG-CGGGcacCUCCCCCGCUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 13089 0.69 0.366845
Target:  5'- cGGGCGUCCGggaagGGAGaGGucGCGGCGGGUc -3'
miRNA:   3'- -UCUGCGGGCa----CCUC-CCc-CGCUGCCUA- -5'
29486 5' -63.7 NC_006151.1 + 8130 0.69 0.35921
Target:  5'- cGGAcccCGCCCgGUGG-GGGGGCGggugcaaagggGCGGGg -3'
miRNA:   3'- -UCU---GCGGG-CACCuCCCCCGC-----------UGCCUa -5'
29486 5' -63.7 NC_006151.1 + 5256 0.7 0.351687
Target:  5'- cGGGgGCCCG-GGGGGcggaGGGCGAgCGGGc -3'
miRNA:   3'- -UCUgCGGGCaCCUCC----CCCGCU-GCCUa -5'
29486 5' -63.7 NC_006151.1 + 142340 0.7 0.344276
Target:  5'- cGGCGCCCGcuuUGGaAGGGGGaaaGGgGGGa -3'
miRNA:   3'- uCUGCGGGC---ACC-UCCCCCg--CUgCCUa -5'
29486 5' -63.7 NC_006151.1 + 29418 0.7 0.344276
Target:  5'- gAGAagGCUCGgugUGGccgcGGGGGGCGGCGGGg -3'
miRNA:   3'- -UCUg-CGGGC---ACC----UCCCCCGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 42255 0.7 0.336978
Target:  5'- cGGCcCCCGgGGAGcGGGGgGugGGAUc -3'
miRNA:   3'- uCUGcGGGCaCCUC-CCCCgCugCCUA- -5'
29486 5' -63.7 NC_006151.1 + 20466 0.7 0.336978
Target:  5'- uGGCGCCgGUcccccGGGGGGGCG-CGGGg -3'
miRNA:   3'- uCUGCGGgCAc----CUCCCCCGCuGCCUa -5'
29486 5' -63.7 NC_006151.1 + 120060 0.7 0.329793
Target:  5'- cGGGCaGCCCGUGGAGGGGcGCaACu--- -3'
miRNA:   3'- -UCUG-CGGGCACCUCCCC-CGcUGccua -5'
29486 5' -63.7 NC_006151.1 + 104000 0.7 0.308921
Target:  5'- uGGCGgCCGUGGAGGcgcgccGcGCGGCGGAg -3'
miRNA:   3'- uCUGCgGGCACCUCCc-----C-CGCUGCCUa -5'
29486 5' -63.7 NC_006151.1 + 31651 0.7 0.308921
Target:  5'- cGGGCGCgCGgggagGGAGGaGGGCGGaGGAa -3'
miRNA:   3'- -UCUGCGgGCa----CCUCC-CCCGCUgCCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.