miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 95133 0.66 0.736639
Target:  5'- uGAGGCGCc-GCGCcGCCGgGUcgGCc -3'
miRNA:   3'- -CUCCGCGucUGCGaCGGCaCGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 72034 0.66 0.736639
Target:  5'- --cGCGCGGGCGCcccGCCGcGCA-GCGu -3'
miRNA:   3'- cucCGCGUCUGCGa--CGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 135085 0.66 0.736639
Target:  5'- cGGGCGgGGGCgGCgggGCCGgGCggGCGg -3'
miRNA:   3'- cUCCGCgUCUG-CGa--CGGCaCGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 69140 0.66 0.736639
Target:  5'- aGGGcGCGCGGGUGCUcgacGCCGUGCcgcucGCAc -3'
miRNA:   3'- -CUC-CGCGUCUGCGA----CGGCACGua---CGU- -5'
29487 3' -59.3 NC_006151.1 + 122211 0.66 0.727812
Target:  5'- -cGGCGCAGccguGCGCggugugcuucgaggaGCUGUGCGUGaCGg -3'
miRNA:   3'- cuCCGCGUC----UGCGa--------------CGGCACGUAC-GU- -5'
29487 3' -59.3 NC_006151.1 + 85485 0.66 0.726827
Target:  5'- -cGGCGaGGACGC-GCCGcUGC-UGCGc -3'
miRNA:   3'- cuCCGCgUCUGCGaCGGC-ACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 90626 0.66 0.716935
Target:  5'- cGAGGCggcccGCGGGCGCuUGgCGauggGCGUGUAc -3'
miRNA:   3'- -CUCCG-----CGUCUGCG-ACgGCa---CGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 96732 0.66 0.716935
Target:  5'- gGAGGCgGCGGGCGCgacgacggagGCCauggcgGCGUGUg -3'
miRNA:   3'- -CUCCG-CGUCUGCGa---------CGGca----CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 2679 0.66 0.726827
Target:  5'- aGAGGCGCAG-CgGCUcgGCCccgggGUGCAgGCGg -3'
miRNA:   3'- -CUCCGCGUCuG-CGA--CGG-----CACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 21675 0.66 0.726827
Target:  5'- -cGGUGCGGGgGCUGCUG-GUAgaacgGCGu -3'
miRNA:   3'- cuCCGCGUCUgCGACGGCaCGUa----CGU- -5'
29487 3' -59.3 NC_006151.1 + 43381 0.66 0.726827
Target:  5'- cGGGgGCGGugGUgGCCGUcgcucgugGCcgGCAa -3'
miRNA:   3'- cUCCgCGUCugCGaCGGCA--------CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 46361 0.66 0.726827
Target:  5'- -cGGCGCAGugGaUGCgGcGgAUGCAg -3'
miRNA:   3'- cuCCGCGUCugCgACGgCaCgUACGU- -5'
29487 3' -59.3 NC_006151.1 + 53344 0.67 0.656375
Target:  5'- cGGGGCGCGcGCGC-GCCGcGUAcUGCGu -3'
miRNA:   3'- -CUCCGCGUcUGCGaCGGCaCGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 66293 0.67 0.656375
Target:  5'- cGAGGCGCAcgcGGCGCUcCCG-GCGguccgagGCGa -3'
miRNA:   3'- -CUCCGCGU---CUGCGAcGGCaCGUa------CGU- -5'
29487 3' -59.3 NC_006151.1 + 83309 0.67 0.665549
Target:  5'- -uGGCGUAGACGUUgcgcaggGCCGUGa--GCAg -3'
miRNA:   3'- cuCCGCGUCUGCGA-------CGGCACguaCGU- -5'
29487 3' -59.3 NC_006151.1 + 112217 0.67 0.666567
Target:  5'- uGGGCGCAGucGCGCUcgcucgucGCCGccgccaggcgcUGCGUGUg -3'
miRNA:   3'- cUCCGCGUC--UGCGA--------CGGC-----------ACGUACGu -5'
29487 3' -59.3 NC_006151.1 + 114156 0.67 0.666567
Target:  5'- cGGGCGCAGcgaccGCGCgGCCcucGUGCuggccuacGUGCAg -3'
miRNA:   3'- cUCCGCGUC-----UGCGaCGG---CACG--------UACGU- -5'
29487 3' -59.3 NC_006151.1 + 62503 0.67 0.666567
Target:  5'- aAGGCGCGGACGacgGCcCGgcgGUAccUGCAg -3'
miRNA:   3'- cUCCGCGUCUGCga-CG-GCa--CGU--ACGU- -5'
29487 3' -59.3 NC_006151.1 + 118580 0.67 0.666567
Target:  5'- cGAGGCGU-GGCGCgUGCCGcucuacccCGUGCAc -3'
miRNA:   3'- -CUCCGCGuCUGCG-ACGGCac------GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 130552 0.67 0.656375
Target:  5'- cGAGG-GCGGcGCGCUGCCGccccacgagUGCAucuggagguggUGCAg -3'
miRNA:   3'- -CUCCgCGUC-UGCGACGGC---------ACGU-----------ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.