miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 52392 0.67 0.624693
Target:  5'- gGGGGCgGCGGGCGCcGCCGcGCccgagaagucaaaGUGCu -3'
miRNA:   3'- -CUCCG-CGUCUGCGaCGGCaCG-------------UACGu -5'
29487 3' -59.3 NC_006151.1 + 88178 0.67 0.656375
Target:  5'- cGAGGUgGUAGACGgUGUCGgcgGCGUGg- -3'
miRNA:   3'- -CUCCG-CGUCUGCgACGGCa--CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 100448 0.67 0.656375
Target:  5'- -uGGCGCAGacgacggagGCGCUGCgcgaGUGCGagGCGc -3'
miRNA:   3'- cuCCGCGUC---------UGCGACGg---CACGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 86578 0.67 0.656375
Target:  5'- -cGGCGCGGGCGCgcuccgagcUGCUG-GCGcGCGc -3'
miRNA:   3'- cuCCGCGUCUGCG---------ACGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 74607 0.67 0.676731
Target:  5'- uGAGGCGCcgcaGGGCG-UGCaCGUGCuccaGCAg -3'
miRNA:   3'- -CUCCGCG----UCUGCgACG-GCACGua--CGU- -5'
29487 3' -59.3 NC_006151.1 + 118580 0.67 0.666567
Target:  5'- cGAGGCGU-GGCGCgUGCCGcucuacccCGUGCAc -3'
miRNA:   3'- -CUCCGCGuCUGCG-ACGGCac------GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 62503 0.67 0.666567
Target:  5'- aAGGCGCGGACGacgGCcCGgcgGUAccUGCAg -3'
miRNA:   3'- cUCCGCGUCUGCga-CG-GCa--CGU--ACGU- -5'
29487 3' -59.3 NC_006151.1 + 114156 0.67 0.666567
Target:  5'- cGGGCGCAGcgaccGCGCgGCCcucGUGCuggccuacGUGCAg -3'
miRNA:   3'- cUCCGCGUC-----UGCGaCGG---CACG--------UACGU- -5'
29487 3' -59.3 NC_006151.1 + 112217 0.67 0.666567
Target:  5'- uGGGCGCAGucGCGCUcgcucgucGCCGccgccaggcgcUGCGUGUg -3'
miRNA:   3'- cUCCGCGUC--UGCGA--------CGGC-----------ACGUACGu -5'
29487 3' -59.3 NC_006151.1 + 83309 0.67 0.665549
Target:  5'- -uGGCGUAGACGUUgcgcaggGCCGUGa--GCAg -3'
miRNA:   3'- cuCCGCGUCUGCGA-------CGGCACguaCGU- -5'
29487 3' -59.3 NC_006151.1 + 66293 0.67 0.656375
Target:  5'- cGAGGCGCAcgcGGCGCUcCCG-GCGguccgagGCGa -3'
miRNA:   3'- -CUCCGCGU---CUGCGAcGGCaCGUa------CGU- -5'
29487 3' -59.3 NC_006151.1 + 53344 0.67 0.656375
Target:  5'- cGGGGCGCGcGCGC-GCCGcGUAcUGCGu -3'
miRNA:   3'- -CUCCGCGUcUGCGaCGGCaCGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 130552 0.67 0.656375
Target:  5'- cGAGG-GCGGcGCGCUGCCGccccacgagUGCAucuggagguggUGCAg -3'
miRNA:   3'- -CUCCgCGUC-UGCGACGGC---------ACGU-----------ACGU- -5'
29487 3' -59.3 NC_006151.1 + 130832 0.68 0.595099
Target:  5'- cGAGGCGCGGcGCGgaGUCGUcgccGUcgGCGg -3'
miRNA:   3'- -CUCCGCGUC-UGCgaCGGCA----CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 118097 0.68 0.599172
Target:  5'- cGAGGCGCuGcgccgcgaccugcugGCGCUGCuCGUGgCGcGCAg -3'
miRNA:   3'- -CUCCGCGuC---------------UGCGACG-GCAC-GUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 102743 0.68 0.605287
Target:  5'- gGAGcGCGCGGccaaGCUGCCGcGCAaGCu -3'
miRNA:   3'- -CUC-CGCGUCug--CGACGGCaCGUaCGu -5'
29487 3' -59.3 NC_006151.1 + 86728 0.68 0.605287
Target:  5'- -cGGCGCGccGcCGCgagGCCG-GCGUGCGc -3'
miRNA:   3'- cuCCGCGU--CuGCGa--CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 130282 0.68 0.605287
Target:  5'- cGAGGcCGCGGGCGCgcGCCG-GCcgacgGCGc -3'
miRNA:   3'- -CUCC-GCGUCUGCGa-CGGCaCGua---CGU- -5'
29487 3' -59.3 NC_006151.1 + 7163 0.68 0.615495
Target:  5'- cGGGCGCgAGGCGCaUGCuCG-GCAcGCGa -3'
miRNA:   3'- cUCCGCG-UCUGCG-ACG-GCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 30590 0.68 0.595099
Target:  5'- cGGGCGCAGggaucguagcaaACGCgggcgGUCG-GCGUGCGc -3'
miRNA:   3'- cUCCGCGUC------------UGCGa----CGGCaCGUACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.