miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 141613 0.68 0.584938
Target:  5'- cGAGGCugccgggaucggGCGGGuCGCUGCCGcgGCGgcgcgGCGg -3'
miRNA:   3'- -CUCCG------------CGUCU-GCGACGGCa-CGUa----CGU- -5'
29487 3' -59.3 NC_006151.1 + 97909 0.68 0.591031
Target:  5'- gGAGGCGCGGAUGCcgucgccgccgagGCCGcGCccGCc -3'
miRNA:   3'- -CUCCGCGUCUGCGa------------CGGCaCGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 30590 0.68 0.595099
Target:  5'- cGGGCGCAGggaucguagcaaACGCgggcgGUCG-GCGUGCGc -3'
miRNA:   3'- cUCCGCGUC------------UGCGa----CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 58665 0.68 0.615495
Target:  5'- -cGGCGCAGGgccgccaugacCGC-GCCGUGCGcGCc -3'
miRNA:   3'- cuCCGCGUCU-----------GCGaCGGCACGUaCGu -5'
29487 3' -59.3 NC_006151.1 + 7163 0.68 0.615495
Target:  5'- cGGGCGCgAGGCGCaUGCuCG-GCAcGCGa -3'
miRNA:   3'- cUCCGCG-UCUGCG-ACG-GCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 130282 0.68 0.605287
Target:  5'- cGAGGcCGCGGGCGCgcGCCG-GCcgacgGCGc -3'
miRNA:   3'- -CUCC-GCGUCUGCGa-CGGCaCGua---CGU- -5'
29487 3' -59.3 NC_006151.1 + 86728 0.68 0.605287
Target:  5'- -cGGCGCGccGcCGCgagGCCG-GCGUGCGc -3'
miRNA:   3'- cuCCGCGU--CuGCGa--CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 102743 0.68 0.605287
Target:  5'- gGAGcGCGCGGccaaGCUGCCGcGCAaGCu -3'
miRNA:   3'- -CUC-CGCGUCug--CGACGGCaCGUaCGu -5'
29487 3' -59.3 NC_006151.1 + 118097 0.68 0.599172
Target:  5'- cGAGGCGCuGcgccgcgaccugcugGCGCUGCuCGUGgCGcGCAg -3'
miRNA:   3'- -CUCCGCGuC---------------UGCGACG-GCAC-GUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 130832 0.68 0.595099
Target:  5'- cGAGGCGCGGcGCGgaGUCGUcgccGUcgGCGg -3'
miRNA:   3'- -CUCCGCGUC-UGCgaCGGCA----CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 35163 0.69 0.505399
Target:  5'- -uGGcCGCAGA-GCggGCCGgGCAUGCAa -3'
miRNA:   3'- cuCC-GCGUCUgCGa-CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 58396 0.69 0.505399
Target:  5'- -cGGCGCAGccggccauggcGCGCaGCUGgGCGUGCGg -3'
miRNA:   3'- cuCCGCGUC-----------UGCGaCGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 113339 0.69 0.52491
Target:  5'- -uGGCGCuGGCGCUGaagcaCGUGCGcgGCc -3'
miRNA:   3'- cuCCGCGuCUGCGACg----GCACGUa-CGu -5'
29487 3' -59.3 NC_006151.1 + 122962 0.69 0.52491
Target:  5'- gGGGGCGCGGACGCcgGCgaCGgggGCGUcgGCGa -3'
miRNA:   3'- -CUCCGCGUCUGCGa-CG--GCa--CGUA--CGU- -5'
29487 3' -59.3 NC_006151.1 + 75429 0.69 0.534772
Target:  5'- -cGGCGUGGGCGCgaagcUGCCG-GCGUgGCGc -3'
miRNA:   3'- cuCCGCGUCUGCG-----ACGGCaCGUA-CGU- -5'
29487 3' -59.3 NC_006151.1 + 104567 0.69 0.534772
Target:  5'- uGGGCGCGcGGCGCgcgGaCGUGC-UGCAg -3'
miRNA:   3'- cUCCGCGU-CUGCGa--CgGCACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 105191 0.69 0.538736
Target:  5'- cGAGGCGCugcAGACGCUGCgccaggaggcggacaCGcUGCG-GCAg -3'
miRNA:   3'- -CUCCGCG---UCUGCGACG---------------GC-ACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 53257 0.69 0.544699
Target:  5'- -uGGCGCGcacgcGGCacaGCUGCCGcGCGUGCu -3'
miRNA:   3'- cuCCGCGU-----CUG---CGACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 137012 0.69 0.554685
Target:  5'- -cGGCGCuGGGCGCccugcucggccUGCCGgacGCGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGCG-----------ACGGCa--CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 124054 0.7 0.495761
Target:  5'- -cGGCGaccuGGACGCgcggacgGCCGUGCGcGCGg -3'
miRNA:   3'- cuCCGCg---UCUGCGa------CGGCACGUaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.