miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 21501 0.67 0.646164
Target:  5'- gGGGGCGCGGGCGUcaCCGggGCggGCu -3'
miRNA:   3'- -CUCCGCGUCUGCGacGGCa-CGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 90698 0.67 0.625716
Target:  5'- gGGGGCgGCGGACGCgcccGCCccGCAgGCGg -3'
miRNA:   3'- -CUCCG-CGUCUGCGa---CGGcaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 52392 0.67 0.624693
Target:  5'- gGGGGCgGCGGGCGCcGCCGcGCccgagaagucaaaGUGCu -3'
miRNA:   3'- -CUCCG-CGUCUGCGaCGGCaCG-------------UACGu -5'
29487 3' -59.3 NC_006151.1 + 27170 0.67 0.646164
Target:  5'- cGAGGCGCcgcgugucgGGGCGCcaggggGCCGcGCAgaagGCGc -3'
miRNA:   3'- -CUCCGCG---------UCUGCGa-----CGGCaCGUa---CGU- -5'
29487 3' -59.3 NC_006151.1 + 89827 0.67 0.646164
Target:  5'- aAGaGCGC-GAUGCUGCCGgcguagGCGUGgGu -3'
miRNA:   3'- cUC-CGCGuCUGCGACGGCa-----CGUACgU- -5'
29487 3' -59.3 NC_006151.1 + 88178 0.67 0.656375
Target:  5'- cGAGGUgGUAGACGgUGUCGgcgGCGUGg- -3'
miRNA:   3'- -CUCCG-CGUCUGCgACGGCa--CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 100448 0.67 0.656375
Target:  5'- -uGGCGCAGacgacggagGCGCUGCgcgaGUGCGagGCGc -3'
miRNA:   3'- cuCCGCGUC---------UGCGACGg---CACGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 86578 0.67 0.656375
Target:  5'- -cGGCGCGGGCGCgcuccgagcUGCUG-GCGcGCGc -3'
miRNA:   3'- cuCCGCGUCUGCG---------ACGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 76955 0.67 0.635941
Target:  5'- -cGGCGCAGACG--GCCGcGCGcGCGu -3'
miRNA:   3'- cuCCGCGUCUGCgaCGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 2679 0.66 0.726827
Target:  5'- aGAGGCGCAG-CgGCUcgGCCccgggGUGCAgGCGg -3'
miRNA:   3'- -CUCCGCGUCuG-CGA--CGG-----CACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 69140 0.66 0.736639
Target:  5'- aGGGcGCGCGGGUGCUcgacGCCGUGCcgcucGCAc -3'
miRNA:   3'- -CUC-CGCGUCUGCGA----CGGCACGua---CGU- -5'
29487 3' -59.3 NC_006151.1 + 96732 0.66 0.716935
Target:  5'- gGAGGCgGCGGGCGCgacgacggagGCCauggcgGCGUGUg -3'
miRNA:   3'- -CUCCG-CGUCUGCGa---------CGGca----CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 90626 0.66 0.716935
Target:  5'- cGAGGCggcccGCGGGCGCuUGgCGauggGCGUGUAc -3'
miRNA:   3'- -CUCCG-----CGUCUGCG-ACgGCa---CGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 105065 0.66 0.705969
Target:  5'- gGAGGCGCccgagcuGGACGUgcagGCCGUcgagugGC-UGCAc -3'
miRNA:   3'- -CUCCGCG-------UCUGCGa---CGGCA------CGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 97509 0.66 0.696941
Target:  5'- -cGGCGguGGCGCUG-CGUGUAg--- -3'
miRNA:   3'- cuCCGCguCUGCGACgGCACGUacgu -5'
29487 3' -59.3 NC_006151.1 + 112620 0.66 0.696941
Target:  5'- -uGGCGCuGGACGagccCUGCCGcGUGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGC----GACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 129928 0.66 0.686859
Target:  5'- cGAGaGCGC-GAUGCUGCCcaGCG-GCAc -3'
miRNA:   3'- -CUC-CGCGuCUGCGACGGcaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 103989 0.66 0.686859
Target:  5'- gGAGGCgGCcGugGCgGCCGUGgAgGCGc -3'
miRNA:   3'- -CUCCG-CGuCugCGaCGGCACgUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 101221 0.66 0.686859
Target:  5'- cAGGCGUGGACGggGCcCGgcggggGCAUGUg -3'
miRNA:   3'- cUCCGCGUCUGCgaCG-GCa-----CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 106680 0.66 0.686859
Target:  5'- -cGGCGCucGGCGC-GCCGggcGCcgGCGa -3'
miRNA:   3'- cuCCGCGu-CUGCGaCGGCa--CGuaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.