Results 61 - 80 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29487 | 3' | -59.3 | NC_006151.1 | + | 30590 | 0.68 | 0.595099 |
Target: 5'- cGGGCGCAGggaucguagcaaACGCgggcgGUCG-GCGUGCGc -3' miRNA: 3'- cUCCGCGUC------------UGCGa----CGGCaCGUACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 97909 | 0.68 | 0.591031 |
Target: 5'- gGAGGCGCGGAUGCcgucgccgccgagGCCGcGCccGCc -3' miRNA: 3'- -CUCCGCGUCUGCGa------------CGGCaCGuaCGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 141613 | 0.68 | 0.584938 |
Target: 5'- cGAGGCugccgggaucggGCGGGuCGCUGCCGcgGCGgcgcgGCGg -3' miRNA: 3'- -CUCCG------------CGUCU-GCGACGGCa-CGUa----CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 78476 | 0.68 | 0.584938 |
Target: 5'- cGAGGUgauGCGGAUGCUcgugaacgccGCCGUG-GUGCAc -3' miRNA: 3'- -CUCCG---CGUCUGCGA----------CGGCACgUACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 71091 | 0.68 | 0.581896 |
Target: 5'- -cGGCGCcgcGGGCGCgggcGCCGUGCGcuaccccuucuuccUGCu -3' miRNA: 3'- cuCCGCG---UCUGCGa---CGGCACGU--------------ACGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 4223 | 0.68 | 0.574811 |
Target: 5'- cGGGGCGCgggcGGGCGCgggcaGCCGgagcggGCAggGCAg -3' miRNA: 3'- -CUCCGCG----UCUGCGa----CGGCa-----CGUa-CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 69968 | 0.68 | 0.574811 |
Target: 5'- cGGGGCcgcGCGGGCGCUGCa--GCGgcgGCAg -3' miRNA: 3'- -CUCCG---CGUCUGCGACGgcaCGUa--CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 99123 | 0.68 | 0.564725 |
Target: 5'- -uGGCGCugcuggaccccgGGGCGCagGCCGUGCAcGUg -3' miRNA: 3'- cuCCGCG------------UCUGCGa-CGGCACGUaCGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 35079 | 0.68 | 0.564725 |
Target: 5'- cGGGgGUGGGuCGCgUGCCGaGCAUGCGc -3' miRNA: 3'- cUCCgCGUCU-GCG-ACGGCaCGUACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 105706 | 0.68 | 0.560703 |
Target: 5'- -cGGCGCGGcCGCgcgccucgacggcGCCGUGCGcGCGc -3' miRNA: 3'- cuCCGCGUCuGCGa------------CGGCACGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 137012 | 0.69 | 0.554685 |
Target: 5'- -cGGCGCuGGGCGCccugcucggccUGCCGgacGCGUGCc -3' miRNA: 3'- cuCCGCG-UCUGCG-----------ACGGCa--CGUACGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 53257 | 0.69 | 0.544699 |
Target: 5'- -uGGCGCGcacgcGGCacaGCUGCCGcGCGUGCu -3' miRNA: 3'- cuCCGCGU-----CUG---CGACGGCaCGUACGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 105191 | 0.69 | 0.538736 |
Target: 5'- cGAGGCGCugcAGACGCUGCgccaggaggcggacaCGcUGCG-GCAg -3' miRNA: 3'- -CUCCGCG---UCUGCGACG---------------GC-ACGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 104567 | 0.69 | 0.534772 |
Target: 5'- uGGGCGCGcGGCGCgcgGaCGUGC-UGCAg -3' miRNA: 3'- cUCCGCGU-CUGCGa--CgGCACGuACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 75429 | 0.69 | 0.534772 |
Target: 5'- -cGGCGUGGGCGCgaagcUGCCG-GCGUgGCGc -3' miRNA: 3'- cuCCGCGUCUGCG-----ACGGCaCGUA-CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 122962 | 0.69 | 0.52491 |
Target: 5'- gGGGGCGCGGACGCcgGCgaCGgggGCGUcgGCGa -3' miRNA: 3'- -CUCCGCGUCUGCGa-CG--GCa--CGUA--CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 113339 | 0.69 | 0.52491 |
Target: 5'- -uGGCGCuGGCGCUGaagcaCGUGCGcgGCc -3' miRNA: 3'- cuCCGCGuCUGCGACg----GCACGUa-CGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 58396 | 0.69 | 0.505399 |
Target: 5'- -cGGCGCAGccggccauggcGCGCaGCUGgGCGUGCGg -3' miRNA: 3'- cuCCGCGUC-----------UGCGaCGGCaCGUACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 35163 | 0.69 | 0.505399 |
Target: 5'- -uGGcCGCAGA-GCggGCCGgGCAUGCAa -3' miRNA: 3'- cuCC-GCGUCUgCGa-CGGCaCGUACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 124054 | 0.7 | 0.495761 |
Target: 5'- -cGGCGaccuGGACGCgcggacgGCCGUGCGcGCGg -3' miRNA: 3'- cuCCGCg---UCUGCGa------CGGCACGUaCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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