miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 97909 0.68 0.591031
Target:  5'- gGAGGCGCGGAUGCcgucgccgccgagGCCGcGCccGCc -3'
miRNA:   3'- -CUCCGCGUCUGCGa------------CGGCaCGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 97975 0.66 0.716935
Target:  5'- cAGGuCGCGGugGUucuUGCCGggcgGCGUGg- -3'
miRNA:   3'- cUCC-GCGUCugCG---ACGGCa---CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 98791 0.71 0.430864
Target:  5'- -uGGCGCAGcacacaacuggGCGCUGCCGcugGCGUugGCGg -3'
miRNA:   3'- cuCCGCGUC-----------UGCGACGGCa--CGUA--CGU- -5'
29487 3' -59.3 NC_006151.1 + 99123 0.68 0.564725
Target:  5'- -uGGCGCugcuggaccccgGGGCGCagGCCGUGCAcGUg -3'
miRNA:   3'- cuCCGCG------------UCUGCGa-CGGCACGUaCGu -5'
29487 3' -59.3 NC_006151.1 + 99558 0.67 0.625716
Target:  5'- uGGGCGCGGcgcgcgcgGCGCUGCUGcGCGaggugGCGg -3'
miRNA:   3'- cUCCGCGUC--------UGCGACGGCaCGUa----CGU- -5'
29487 3' -59.3 NC_006151.1 + 100448 0.67 0.656375
Target:  5'- -uGGCGCAGacgacggagGCGCUGCgcgaGUGCGagGCGc -3'
miRNA:   3'- cuCCGCGUC---------UGCGACGg---CACGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 101221 0.66 0.686859
Target:  5'- cAGGCGUGGACGggGCcCGgcggggGCAUGUg -3'
miRNA:   3'- cUCCGCGUCUGCgaCG-GCa-----CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 101288 0.7 0.495761
Target:  5'- aGGGCGCGGGCgGC-GCCGcGC-UGCAc -3'
miRNA:   3'- cUCCGCGUCUG-CGaCGGCaCGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 102335 0.76 0.206719
Target:  5'- gGAGGCGCGcGCGCUGCUGgacgugGCcgGCGa -3'
miRNA:   3'- -CUCCGCGUcUGCGACGGCa-----CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 102743 0.68 0.605287
Target:  5'- gGAGcGCGCGGccaaGCUGCCGcGCAaGCu -3'
miRNA:   3'- -CUC-CGCGUCug--CGACGGCaCGUaCGu -5'
29487 3' -59.3 NC_006151.1 + 103989 0.66 0.686859
Target:  5'- gGAGGCgGCcGugGCgGCCGUGgAgGCGc -3'
miRNA:   3'- -CUCCG-CGuCugCGaCGGCACgUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 104567 0.69 0.534772
Target:  5'- uGGGCGCGcGGCGCgcgGaCGUGC-UGCAg -3'
miRNA:   3'- cUCCGCGU-CUGCGa--CgGCACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 105065 0.66 0.705969
Target:  5'- gGAGGCGCccgagcuGGACGUgcagGCCGUcgagugGC-UGCAc -3'
miRNA:   3'- -CUCCGCG-------UCUGCGa---CGGCA------CGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 105191 0.69 0.538736
Target:  5'- cGAGGCGCugcAGACGCUGCgccaggaggcggacaCGcUGCG-GCAg -3'
miRNA:   3'- -CUCCGCG---UCUGCGACG---------------GC-ACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 105284 0.71 0.430864
Target:  5'- uGGGCGCGcGCGCgGCCGcGCcgGCGc -3'
miRNA:   3'- cUCCGCGUcUGCGaCGGCaCGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 105706 0.68 0.560703
Target:  5'- -cGGCGCGGcCGCgcgccucgacggcGCCGUGCGcGCGc -3'
miRNA:   3'- cuCCGCGUCuGCGa------------CGGCACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 106680 0.66 0.686859
Target:  5'- -cGGCGCucGGCGC-GCCGggcGCcgGCGa -3'
miRNA:   3'- cuCCGCGu-CUGCGaCGGCa--CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 112217 0.67 0.666567
Target:  5'- uGGGCGCAGucGCGCUcgcucgucGCCGccgccaggcgcUGCGUGUg -3'
miRNA:   3'- cUCCGCGUC--UGCGA--------CGGC-----------ACGUACGu -5'
29487 3' -59.3 NC_006151.1 + 112620 0.66 0.696941
Target:  5'- -uGGCGCuGGACGagccCUGCCGcGUGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGC----GACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 113120 0.66 0.70697
Target:  5'- -cGGaCGCGGACGCcGCCGgGCccgGCu -3'
miRNA:   3'- cuCC-GCGUCUGCGaCGGCaCGua-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.