miRNA display CGI


Results 81 - 100 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 113339 0.69 0.52491
Target:  5'- -uGGCGCuGGCGCUGaagcaCGUGCGcgGCc -3'
miRNA:   3'- cuCCGCGuCUGCGACg----GCACGUa-CGu -5'
29487 3' -59.3 NC_006151.1 + 114156 0.67 0.666567
Target:  5'- cGGGCGCAGcgaccGCGCgGCCcucGUGCuggccuacGUGCAg -3'
miRNA:   3'- cUCCGCGUC-----UGCGaCGG---CACG--------UACGU- -5'
29487 3' -59.3 NC_006151.1 + 118097 0.68 0.599172
Target:  5'- cGAGGCGCuGcgccgcgaccugcugGCGCUGCuCGUGgCGcGCAg -3'
miRNA:   3'- -CUCCGCGuC---------------UGCGACG-GCAC-GUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 118156 0.66 0.736639
Target:  5'- -cGGCGguGGCGCcGCUgGUGCGcgGCc -3'
miRNA:   3'- cuCCGCguCUGCGaCGG-CACGUa-CGu -5'
29487 3' -59.3 NC_006151.1 + 118580 0.67 0.666567
Target:  5'- cGAGGCGU-GGCGCgUGCCGcucuacccCGUGCAc -3'
miRNA:   3'- -CUCCGCGuCUGCG-ACGGCac------GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 118963 0.71 0.430864
Target:  5'- gGAGGCGCucguCGCcGCCG-GCGUGUAc -3'
miRNA:   3'- -CUCCGCGucu-GCGaCGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 119993 0.71 0.413251
Target:  5'- -uGGCGCGGcgcACGCUGCUggcgGUGC-UGCAg -3'
miRNA:   3'- cuCCGCGUC---UGCGACGG----CACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 121162 0.71 0.404612
Target:  5'- -uGGUGCAGAcggccguguaCGCgGCCGUGC-UGCAc -3'
miRNA:   3'- cuCCGCGUCU----------GCGaCGGCACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 121861 0.72 0.363173
Target:  5'- gGAGGCGCAGACGaC-GCCGcucaCGUGCGc -3'
miRNA:   3'- -CUCCGCGUCUGC-GaCGGCac--GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 122211 0.66 0.727812
Target:  5'- -cGGCGCAGccguGCGCggugugcuucgaggaGCUGUGCGUGaCGg -3'
miRNA:   3'- cuCCGCGUC----UGCGa--------------CGGCACGUAC-GU- -5'
29487 3' -59.3 NC_006151.1 + 122962 0.69 0.52491
Target:  5'- gGGGGCGCGGACGCcgGCgaCGgggGCGUcgGCGa -3'
miRNA:   3'- -CUCCGCGUCUGCGa-CG--GCa--CGUA--CGU- -5'
29487 3' -59.3 NC_006151.1 + 123035 0.66 0.716935
Target:  5'- -uGGCGUGGGCGgacCUGCCGgccgcgGCGcUGCGc -3'
miRNA:   3'- cuCCGCGUCUGC---GACGGCa-----CGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 124054 0.7 0.495761
Target:  5'- -cGGCGaccuGGACGCgcggacgGCCGUGCGcGCGg -3'
miRNA:   3'- cuCCGCg---UCUGCGa------CGGCACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 129928 0.66 0.686859
Target:  5'- cGAGaGCGC-GAUGCUGCCcaGCG-GCAc -3'
miRNA:   3'- -CUC-CGCGuCUGCGACGGcaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 130282 0.68 0.605287
Target:  5'- cGAGGcCGCGGGCGCgcGCCG-GCcgacgGCGc -3'
miRNA:   3'- -CUCC-GCGUCUGCGa-CGGCaCGua---CGU- -5'
29487 3' -59.3 NC_006151.1 + 130552 0.67 0.656375
Target:  5'- cGAGG-GCGGcGCGCUGCCGccccacgagUGCAucuggagguggUGCAg -3'
miRNA:   3'- -CUCCgCGUC-UGCGACGGC---------ACGU-----------ACGU- -5'
29487 3' -59.3 NC_006151.1 + 130832 0.68 0.595099
Target:  5'- cGAGGCGCGGcGCGgaGUCGUcgccGUcgGCGg -3'
miRNA:   3'- -CUCCGCGUC-UGCgaCGGCA----CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 133653 0.73 0.324771
Target:  5'- cGGGUGCgagAGGCGCUGCCG-GCGcgGCGg -3'
miRNA:   3'- cUCCGCG---UCUGCGACGGCaCGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 135085 0.66 0.736639
Target:  5'- cGGGCGgGGGCgGCgggGCCGgGCggGCGg -3'
miRNA:   3'- cUCCGCgUCUG-CGa--CGGCaCGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 137012 0.69 0.554685
Target:  5'- -cGGCGCuGGGCGCccugcucggccUGCCGgacGCGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGCG-----------ACGGCa--CGUACGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.