miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 97909 0.68 0.591031
Target:  5'- gGAGGCGCGGAUGCcgucgccgccgagGCCGcGCccGCc -3'
miRNA:   3'- -CUCCGCGUCUGCGa------------CGGCaCGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 97795 0.66 0.736639
Target:  5'- cGAaGCGCucAGGCGCgcgGCCGUGCGccggucGCGg -3'
miRNA:   3'- -CUcCGCG--UCUGCGa--CGGCACGUa-----CGU- -5'
29487 3' -59.3 NC_006151.1 + 97509 0.66 0.696941
Target:  5'- -cGGCGguGGCGCUG-CGUGUAg--- -3'
miRNA:   3'- cuCCGCguCUGCGACgGCACGUacgu -5'
29487 3' -59.3 NC_006151.1 + 96732 0.66 0.716935
Target:  5'- gGAGGCgGCGGGCGCgacgacggagGCCauggcgGCGUGUg -3'
miRNA:   3'- -CUCCG-CGUCUGCGa---------CGGca----CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 96602 0.72 0.396088
Target:  5'- cGGGCGCGGGCGCgccgacGUCGUGCccgaggGCGc -3'
miRNA:   3'- cUCCGCGUCUGCGa-----CGGCACGua----CGU- -5'
29487 3' -59.3 NC_006151.1 + 95133 0.66 0.736639
Target:  5'- uGAGGCGCc-GCGCcGCCGgGUcgGCc -3'
miRNA:   3'- -CUCCGCGucUGCGaCGGCaCGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 90698 0.67 0.625716
Target:  5'- gGGGGCgGCGGACGCgcccGCCccGCAgGCGg -3'
miRNA:   3'- -CUCCG-CGUCUGCGa---CGGcaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 90626 0.66 0.716935
Target:  5'- cGAGGCggcccGCGGGCGCuUGgCGauggGCGUGUAc -3'
miRNA:   3'- -CUCCG-----CGUCUGCG-ACgGCa---CGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 89827 0.67 0.646164
Target:  5'- aAGaGCGC-GAUGCUGCCGgcguagGCGUGgGu -3'
miRNA:   3'- cUC-CGCGuCUGCGACGGCa-----CGUACgU- -5'
29487 3' -59.3 NC_006151.1 + 88178 0.67 0.656375
Target:  5'- cGAGGUgGUAGACGgUGUCGgcgGCGUGg- -3'
miRNA:   3'- -CUCCG-CGUCUGCgACGGCa--CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 86728 0.68 0.605287
Target:  5'- -cGGCGCGccGcCGCgagGCCG-GCGUGCGc -3'
miRNA:   3'- cuCCGCGU--CuGCGa--CGGCaCGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 86578 0.67 0.656375
Target:  5'- -cGGCGCGGGCGCgcuccgagcUGCUG-GCGcGCGc -3'
miRNA:   3'- cuCCGCGUCUGCG---------ACGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 85897 0.74 0.269776
Target:  5'- -cGGCGCAcGACGCcgugGCCGUGCA-GUAc -3'
miRNA:   3'- cuCCGCGU-CUGCGa---CGGCACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 85485 0.66 0.726827
Target:  5'- -cGGCGaGGACGC-GCCGcUGC-UGCGc -3'
miRNA:   3'- cuCCGCgUCUGCGaCGGC-ACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 83309 0.67 0.665549
Target:  5'- -uGGCGUAGACGUUgcgcaggGCCGUGa--GCAg -3'
miRNA:   3'- cuCCGCGUCUGCGA-------CGGCACguaCGU- -5'
29487 3' -59.3 NC_006151.1 + 82425 0.78 0.169232
Target:  5'- aGAGGCGCGGGCGCUcGCgCGgGCGcUGCAc -3'
miRNA:   3'- -CUCCGCGUCUGCGA-CG-GCaCGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 78476 0.68 0.584938
Target:  5'- cGAGGUgauGCGGAUGCUcgugaacgccGCCGUG-GUGCAc -3'
miRNA:   3'- -CUCCG---CGUCUGCGA----------CGGCACgUACGU- -5'
29487 3' -59.3 NC_006151.1 + 76955 0.67 0.635941
Target:  5'- -cGGCGCAGACG--GCCGcGCGcGCGu -3'
miRNA:   3'- cuCCGCGUCUGCgaCGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 76703 0.7 0.458089
Target:  5'- -uGGCGCGGGCGCgccgcgGCCGccuuuuaaUGCAUGa- -3'
miRNA:   3'- cuCCGCGUCUGCGa-----CGGC--------ACGUACgu -5'
29487 3' -59.3 NC_006151.1 + 75429 0.69 0.534772
Target:  5'- -cGGCGUGGGCGCgaagcUGCCG-GCGUgGCGc -3'
miRNA:   3'- cuCCGCGUCUGCG-----ACGGCaCGUA-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.