miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 135085 0.66 0.736639
Target:  5'- cGGGCGgGGGCgGCgggGCCGgGCggGCGg -3'
miRNA:   3'- cUCCGCgUCUG-CGa--CGGCaCGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 72034 0.66 0.736639
Target:  5'- --cGCGCGGGCGCcccGCCGcGCA-GCGu -3'
miRNA:   3'- cucCGCGUCUGCGa--CGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 95133 0.66 0.736639
Target:  5'- uGAGGCGCc-GCGCcGCCGgGUcgGCc -3'
miRNA:   3'- -CUCCGCGucUGCGaCGGCaCGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 97795 0.66 0.736639
Target:  5'- cGAaGCGCucAGGCGCgcgGCCGUGCGccggucGCGg -3'
miRNA:   3'- -CUcCGCG--UCUGCGa--CGGCACGUa-----CGU- -5'
29487 3' -59.3 NC_006151.1 + 118156 0.66 0.736639
Target:  5'- -cGGCGguGGCGCcGCUgGUGCGcgGCc -3'
miRNA:   3'- cuCCGCguCUGCGaCGG-CACGUa-CGu -5'
29487 3' -59.3 NC_006151.1 + 90626 0.66 0.716935
Target:  5'- cGAGGCggcccGCGGGCGCuUGgCGauggGCGUGUAc -3'
miRNA:   3'- -CUCCG-----CGUCUGCG-ACgGCa---CGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 53083 0.66 0.716935
Target:  5'- cGAGGCGCAGGUGCUcGuCCGUcaGCGggagGCc -3'
miRNA:   3'- -CUCCGCGUCUGCGA-C-GGCA--CGUa---CGu -5'
29487 3' -59.3 NC_006151.1 + 106680 0.66 0.686859
Target:  5'- -cGGCGCucGGCGC-GCCGggcGCcgGCGa -3'
miRNA:   3'- cuCCGCGu-CUGCGaCGGCa--CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 129928 0.66 0.686859
Target:  5'- cGAGaGCGC-GAUGCUGCCcaGCG-GCAc -3'
miRNA:   3'- -CUC-CGCGuCUGCGACGGcaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 112620 0.66 0.696941
Target:  5'- -uGGCGCuGGACGagccCUGCCGcGUGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGC----GACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 97509 0.66 0.696941
Target:  5'- -cGGCGguGGCGCUG-CGUGUAg--- -3'
miRNA:   3'- cuCCGCguCUGCGACgGCACGUacgu -5'
29487 3' -59.3 NC_006151.1 + 20978 0.66 0.703967
Target:  5'- uGGGCGCgucgccgggcacgaGGacgGCGCUGCCGgcgaCGUGCAc -3'
miRNA:   3'- cUCCGCG--------------UC---UGCGACGGCac--GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 105065 0.66 0.705969
Target:  5'- gGAGGCGCccgagcuGGACGUgcagGCCGUcgagugGC-UGCAc -3'
miRNA:   3'- -CUCCGCG-------UCUGCGa---CGGCA------CGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 113120 0.66 0.70697
Target:  5'- -cGGaCGCGGACGCcGCCGgGCccgGCu -3'
miRNA:   3'- cuCC-GCGUCUGCGaCGGCaCGua-CGu -5'
29487 3' -59.3 NC_006151.1 + 5668 0.66 0.715941
Target:  5'- gGAGGCuggggaaGCGGGCcCccGCCGUGCcgGCGc -3'
miRNA:   3'- -CUCCG-------CGUCUGcGa-CGGCACGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 54911 0.66 0.715941
Target:  5'- -cGGCGCAG-CGCgugcacggcgaggUGCUG-GCGUGCc -3'
miRNA:   3'- cuCCGCGUCuGCG-------------ACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 27440 0.66 0.716935
Target:  5'- uGGGCGCggcGGACGCgguggGUCGgggGCggGCGg -3'
miRNA:   3'- cUCCGCG---UCUGCGa----CGGCa--CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 75317 0.66 0.716935
Target:  5'- aGGGGUgGCAGAgGgUGCCcaugGCGUGCu -3'
miRNA:   3'- -CUCCG-CGUCUgCgACGGca--CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 97975 0.66 0.716935
Target:  5'- cAGGuCGCGGugGUucuUGCCGggcgGCGUGg- -3'
miRNA:   3'- cUCC-GCGUCugCG---ACGGCa---CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 123035 0.66 0.716935
Target:  5'- -uGGCGUGGGCGgacCUGCCGgccgcgGCGcUGCGc -3'
miRNA:   3'- cuCCGCGUCUGC---GACGGCa-----CGU-ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.