miRNA display CGI


Results 81 - 100 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 100448 0.67 0.656375
Target:  5'- -uGGCGCAGacgacggagGCGCUGCgcgaGUGCGagGCGc -3'
miRNA:   3'- cuCCGCGUC---------UGCGACGg---CACGUa-CGU- -5'
29487 3' -59.3 NC_006151.1 + 88178 0.67 0.656375
Target:  5'- cGAGGUgGUAGACGgUGUCGgcgGCGUGg- -3'
miRNA:   3'- -CUCCG-CGUCUGCgACGGCa--CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 89827 0.67 0.646164
Target:  5'- aAGaGCGC-GAUGCUGCCGgcguagGCGUGgGu -3'
miRNA:   3'- cUC-CGCGuCUGCGACGGCa-----CGUACgU- -5'
29487 3' -59.3 NC_006151.1 + 27170 0.67 0.646164
Target:  5'- cGAGGCGCcgcgugucgGGGCGCcaggggGCCGcGCAgaagGCGc -3'
miRNA:   3'- -CUCCGCG---------UCUGCGa-----CGGCaCGUa---CGU- -5'
29487 3' -59.3 NC_006151.1 + 21501 0.67 0.646164
Target:  5'- gGGGGCGCGGGCGUcaCCGggGCggGCu -3'
miRNA:   3'- -CUCCGCGUCUGCGacGGCa-CGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 31738 0.67 0.635941
Target:  5'- aGAGGCGCccgcgccggGGACGC-GCC-UGCGgcgGCGg -3'
miRNA:   3'- -CUCCGCG---------UCUGCGaCGGcACGUa--CGU- -5'
29487 3' -59.3 NC_006151.1 + 76955 0.67 0.635941
Target:  5'- -cGGCGCAGACG--GCCGcGCGcGCGu -3'
miRNA:   3'- cuCCGCGUCUGCgaCGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 66293 0.67 0.656375
Target:  5'- cGAGGCGCAcgcGGCGCUcCCG-GCGguccgagGCGa -3'
miRNA:   3'- -CUCCGCGU---CUGCGAcGGCaCGUa------CGU- -5'
29487 3' -59.3 NC_006151.1 + 83309 0.67 0.665549
Target:  5'- -uGGCGUAGACGUUgcgcaggGCCGUGa--GCAg -3'
miRNA:   3'- cuCCGCGUCUGCGA-------CGGCACguaCGU- -5'
29487 3' -59.3 NC_006151.1 + 112217 0.67 0.666567
Target:  5'- uGGGCGCAGucGCGCUcgcucgucGCCGccgccaggcgcUGCGUGUg -3'
miRNA:   3'- cUCCGCGUC--UGCGA--------CGGC-----------ACGUACGu -5'
29487 3' -59.3 NC_006151.1 + 112620 0.66 0.696941
Target:  5'- -uGGCGCuGGACGagccCUGCCGcGUGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGC----GACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 129928 0.66 0.686859
Target:  5'- cGAGaGCGC-GAUGCUGCCcaGCG-GCAc -3'
miRNA:   3'- -CUC-CGCGuCUGCGACGGcaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 106680 0.66 0.686859
Target:  5'- -cGGCGCucGGCGC-GCCGggcGCcgGCGa -3'
miRNA:   3'- cuCCGCGu-CUGCGaCGGCa--CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 103989 0.66 0.686859
Target:  5'- gGAGGCgGCcGugGCgGCCGUGgAgGCGc -3'
miRNA:   3'- -CUCCG-CGuCugCGaCGGCACgUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 101221 0.66 0.686859
Target:  5'- cAGGCGUGGACGggGCcCGgcggggGCAUGUg -3'
miRNA:   3'- cUCCGCGUCUGCgaCG-GCa-----CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 73261 0.66 0.685848
Target:  5'- cGGGCGcCAGGCgGUUGCCG-GCguugaccGUGCGg -3'
miRNA:   3'- cUCCGC-GUCUG-CGACGGCaCG-------UACGU- -5'
29487 3' -59.3 NC_006151.1 + 74607 0.67 0.676731
Target:  5'- uGAGGCGCcgcaGGGCG-UGCaCGUGCuccaGCAg -3'
miRNA:   3'- -CUCCGCG----UCUGCgACG-GCACGua--CGU- -5'
29487 3' -59.3 NC_006151.1 + 118580 0.67 0.666567
Target:  5'- cGAGGCGU-GGCGCgUGCCGcucuacccCGUGCAc -3'
miRNA:   3'- -CUCCGCGuCUGCG-ACGGCac------GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 62503 0.67 0.666567
Target:  5'- aAGGCGCGGACGacgGCcCGgcgGUAccUGCAg -3'
miRNA:   3'- cUCCGCGUCUGCga-CG-GCa--CGU--ACGU- -5'
29487 3' -59.3 NC_006151.1 + 114156 0.67 0.666567
Target:  5'- cGGGCGCAGcgaccGCGCgGCCcucGUGCuggccuacGUGCAg -3'
miRNA:   3'- cUCCGCGUC-----UGCGaCGG---CACG--------UACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.