Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29487 | 3' | -59.3 | NC_006151.1 | + | 100448 | 0.67 | 0.656375 |
Target: 5'- -uGGCGCAGacgacggagGCGCUGCgcgaGUGCGagGCGc -3' miRNA: 3'- cuCCGCGUC---------UGCGACGg---CACGUa-CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 88178 | 0.67 | 0.656375 |
Target: 5'- cGAGGUgGUAGACGgUGUCGgcgGCGUGg- -3' miRNA: 3'- -CUCCG-CGUCUGCgACGGCa--CGUACgu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 89827 | 0.67 | 0.646164 |
Target: 5'- aAGaGCGC-GAUGCUGCCGgcguagGCGUGgGu -3' miRNA: 3'- cUC-CGCGuCUGCGACGGCa-----CGUACgU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 27170 | 0.67 | 0.646164 |
Target: 5'- cGAGGCGCcgcgugucgGGGCGCcaggggGCCGcGCAgaagGCGc -3' miRNA: 3'- -CUCCGCG---------UCUGCGa-----CGGCaCGUa---CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 21501 | 0.67 | 0.646164 |
Target: 5'- gGGGGCGCGGGCGUcaCCGggGCggGCu -3' miRNA: 3'- -CUCCGCGUCUGCGacGGCa-CGuaCGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 31738 | 0.67 | 0.635941 |
Target: 5'- aGAGGCGCccgcgccggGGACGC-GCC-UGCGgcgGCGg -3' miRNA: 3'- -CUCCGCG---------UCUGCGaCGGcACGUa--CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 76955 | 0.67 | 0.635941 |
Target: 5'- -cGGCGCAGACG--GCCGcGCGcGCGu -3' miRNA: 3'- cuCCGCGUCUGCgaCGGCaCGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 66293 | 0.67 | 0.656375 |
Target: 5'- cGAGGCGCAcgcGGCGCUcCCG-GCGguccgagGCGa -3' miRNA: 3'- -CUCCGCGU---CUGCGAcGGCaCGUa------CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 83309 | 0.67 | 0.665549 |
Target: 5'- -uGGCGUAGACGUUgcgcaggGCCGUGa--GCAg -3' miRNA: 3'- cuCCGCGUCUGCGA-------CGGCACguaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 112217 | 0.67 | 0.666567 |
Target: 5'- uGGGCGCAGucGCGCUcgcucgucGCCGccgccaggcgcUGCGUGUg -3' miRNA: 3'- cUCCGCGUC--UGCGA--------CGGC-----------ACGUACGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 112620 | 0.66 | 0.696941 |
Target: 5'- -uGGCGCuGGACGagccCUGCCGcGUGUGCc -3' miRNA: 3'- cuCCGCG-UCUGC----GACGGCaCGUACGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 129928 | 0.66 | 0.686859 |
Target: 5'- cGAGaGCGC-GAUGCUGCCcaGCG-GCAc -3' miRNA: 3'- -CUC-CGCGuCUGCGACGGcaCGUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 106680 | 0.66 | 0.686859 |
Target: 5'- -cGGCGCucGGCGC-GCCGggcGCcgGCGa -3' miRNA: 3'- cuCCGCGu-CUGCGaCGGCa--CGuaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 103989 | 0.66 | 0.686859 |
Target: 5'- gGAGGCgGCcGugGCgGCCGUGgAgGCGc -3' miRNA: 3'- -CUCCG-CGuCugCGaCGGCACgUaCGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 101221 | 0.66 | 0.686859 |
Target: 5'- cAGGCGUGGACGggGCcCGgcggggGCAUGUg -3' miRNA: 3'- cUCCGCGUCUGCgaCG-GCa-----CGUACGu -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 73261 | 0.66 | 0.685848 |
Target: 5'- cGGGCGcCAGGCgGUUGCCG-GCguugaccGUGCGg -3' miRNA: 3'- cUCCGC-GUCUG-CGACGGCaCG-------UACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 74607 | 0.67 | 0.676731 |
Target: 5'- uGAGGCGCcgcaGGGCG-UGCaCGUGCuccaGCAg -3' miRNA: 3'- -CUCCGCG----UCUGCgACG-GCACGua--CGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 118580 | 0.67 | 0.666567 |
Target: 5'- cGAGGCGU-GGCGCgUGCCGcucuacccCGUGCAc -3' miRNA: 3'- -CUCCGCGuCUGCG-ACGGCac------GUACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 62503 | 0.67 | 0.666567 |
Target: 5'- aAGGCGCGGACGacgGCcCGgcgGUAccUGCAg -3' miRNA: 3'- cUCCGCGUCUGCga-CG-GCa--CGU--ACGU- -5' |
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29487 | 3' | -59.3 | NC_006151.1 | + | 114156 | 0.67 | 0.666567 |
Target: 5'- cGGGCGCAGcgaccGCGCgGCCcucGUGCuggccuacGUGCAg -3' miRNA: 3'- cUCCGCGUC-----UGCGaCGG---CACG--------UACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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