miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 5668 0.66 0.715941
Target:  5'- gGAGGCuggggaaGCGGGCcCccGCCGUGCcgGCGc -3'
miRNA:   3'- -CUCCG-------CGUCUGcGa-CGGCACGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 54911 0.66 0.715941
Target:  5'- -cGGCGCAG-CGCgugcacggcgaggUGCUG-GCGUGCc -3'
miRNA:   3'- cuCCGCGUCuGCG-------------ACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 113120 0.66 0.70697
Target:  5'- -cGGaCGCGGACGCcGCCGgGCccgGCu -3'
miRNA:   3'- cuCC-GCGUCUGCGaCGGCaCGua-CGu -5'
29487 3' -59.3 NC_006151.1 + 105065 0.66 0.705969
Target:  5'- gGAGGCGCccgagcuGGACGUgcagGCCGUcgagugGC-UGCAc -3'
miRNA:   3'- -CUCCGCG-------UCUGCGa---CGGCA------CGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 20978 0.66 0.703967
Target:  5'- uGGGCGCgucgccgggcacgaGGacgGCGCUGCCGgcgaCGUGCAc -3'
miRNA:   3'- cUCCGCG--------------UC---UGCGACGGCac--GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 112620 0.66 0.696941
Target:  5'- -uGGCGCuGGACGagccCUGCCGcGUGUGCc -3'
miRNA:   3'- cuCCGCG-UCUGC----GACGGCaCGUACGu -5'
29487 3' -59.3 NC_006151.1 + 97509 0.66 0.696941
Target:  5'- -cGGCGguGGCGCUG-CGUGUAg--- -3'
miRNA:   3'- cuCCGCguCUGCGACgGCACGUacgu -5'
29487 3' -59.3 NC_006151.1 + 129928 0.66 0.686859
Target:  5'- cGAGaGCGC-GAUGCUGCCcaGCG-GCAc -3'
miRNA:   3'- -CUC-CGCGuCUGCGACGGcaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 106680 0.66 0.686859
Target:  5'- -cGGCGCucGGCGC-GCCGggcGCcgGCGa -3'
miRNA:   3'- cuCCGCGu-CUGCGaCGGCa--CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 103989 0.66 0.686859
Target:  5'- gGAGGCgGCcGugGCgGCCGUGgAgGCGc -3'
miRNA:   3'- -CUCCG-CGuCugCGaCGGCACgUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 101221 0.66 0.686859
Target:  5'- cAGGCGUGGACGggGCcCGgcggggGCAUGUg -3'
miRNA:   3'- cUCCGCGUCUGCgaCG-GCa-----CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 73261 0.66 0.685848
Target:  5'- cGGGCGcCAGGCgGUUGCCG-GCguugaccGUGCGg -3'
miRNA:   3'- cUCCGC-GUCUG-CGACGGCaCG-------UACGU- -5'
29487 3' -59.3 NC_006151.1 + 74607 0.67 0.676731
Target:  5'- uGAGGCGCcgcaGGGCG-UGCaCGUGCuccaGCAg -3'
miRNA:   3'- -CUCCGCG----UCUGCgACG-GCACGua--CGU- -5'
29487 3' -59.3 NC_006151.1 + 118580 0.67 0.666567
Target:  5'- cGAGGCGU-GGCGCgUGCCGcucuacccCGUGCAc -3'
miRNA:   3'- -CUCCGCGuCUGCG-ACGGCac------GUACGU- -5'
29487 3' -59.3 NC_006151.1 + 62503 0.67 0.666567
Target:  5'- aAGGCGCGGACGacgGCcCGgcgGUAccUGCAg -3'
miRNA:   3'- cUCCGCGUCUGCga-CG-GCa--CGU--ACGU- -5'
29487 3' -59.3 NC_006151.1 + 114156 0.67 0.666567
Target:  5'- cGGGCGCAGcgaccGCGCgGCCcucGUGCuggccuacGUGCAg -3'
miRNA:   3'- cUCCGCGUC-----UGCGaCGG---CACG--------UACGU- -5'
29487 3' -59.3 NC_006151.1 + 112217 0.67 0.666567
Target:  5'- uGGGCGCAGucGCGCUcgcucgucGCCGccgccaggcgcUGCGUGUg -3'
miRNA:   3'- cUCCGCGUC--UGCGA--------CGGC-----------ACGUACGu -5'
29487 3' -59.3 NC_006151.1 + 83309 0.67 0.665549
Target:  5'- -uGGCGUAGACGUUgcgcaggGCCGUGa--GCAg -3'
miRNA:   3'- cuCCGCGUCUGCGA-------CGGCACguaCGU- -5'
29487 3' -59.3 NC_006151.1 + 53344 0.67 0.656375
Target:  5'- cGGGGCGCGcGCGC-GCCGcGUAcUGCGu -3'
miRNA:   3'- -CUCCGCGUcUGCGaCGGCaCGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 130552 0.67 0.656375
Target:  5'- cGAGG-GCGGcGCGCUGCCGccccacgagUGCAucuggagguggUGCAg -3'
miRNA:   3'- -CUCCgCGUC-UGCGACGGC---------ACGU-----------ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.