Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29487 | 5' | -57.5 | NC_006151.1 | + | 103402 | 0.71 | 0.55047 |
Target: 5'- gCUGGGCgacuuugCCA-CGCUGGGCCCg -3' miRNA: 3'- aGACCUGacgua--GGUcGCGACCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 102501 | 0.68 | 0.751531 |
Target: 5'- -aUGGAC-GCcg-CGGCGCgGGACCCc -3' miRNA: 3'- agACCUGaCGuagGUCGCGaCCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 101197 | 0.66 | 0.815634 |
Target: 5'- -gUGGAC-GCGUgCCuGCGCgaGGGCCa -3' miRNA: 3'- agACCUGaCGUA-GGuCGCGa-CCUGGg -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 100463 | 0.66 | 0.806906 |
Target: 5'- --aGGcGCUGCGcgagugcgaGGCGCUGGGCCUg -3' miRNA: 3'- agaCC-UGACGUagg------UCGCGACCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 100335 | 0.67 | 0.77981 |
Target: 5'- cCUGGGCacgugGCGUCUGGCGgacgucgUGGACgCCg -3' miRNA: 3'- aGACCUGa----CGUAGGUCGCg------ACCUG-GG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 99108 | 0.7 | 0.621256 |
Target: 5'- --cGGACcaggGCGUgCUGGCGCugcUGGACCCc -3' miRNA: 3'- agaCCUGa---CGUA-GGUCGCG---ACCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 98963 | 0.66 | 0.848813 |
Target: 5'- -gUGGACgagGC----GGCGCUGGugCCc -3' miRNA: 3'- agACCUGa--CGuaggUCGCGACCugGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 98805 | 0.68 | 0.712407 |
Target: 5'- aCUGGgcGCUGCcgCUGGCGUUGGcgguGCgCCa -3' miRNA: 3'- aGACC--UGACGuaGGUCGCGACC----UG-GG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 86322 | 0.66 | 0.824197 |
Target: 5'- --gGGGCcgUGCucgCCcGCGCcgUGGGCCCg -3' miRNA: 3'- agaCCUG--ACGua-GGuCGCG--ACCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 85844 | 0.75 | 0.360169 |
Target: 5'- gCUGGAgCUGCAgaaccgCCAGCGCgugacGGCCCc -3' miRNA: 3'- aGACCU-GACGUa-----GGUCGCGac---CUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 85764 | 0.69 | 0.672194 |
Target: 5'- gCUGG-CcGCG-CUGGCGCUGGACgCg -3' miRNA: 3'- aGACCuGaCGUaGGUCGCGACCUGgG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 85233 | 0.68 | 0.712407 |
Target: 5'- cCUGGACgcGCugagCCAgGCGCUGG-CCg -3' miRNA: 3'- aGACCUGa-CGua--GGU-CGCGACCuGGg -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 82623 | 0.67 | 0.79802 |
Target: 5'- --cGGGCgccGCggUgGGCGCgGGACCCc -3' miRNA: 3'- agaCCUGa--CGuaGgUCGCGaCCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 80685 | 0.67 | 0.761074 |
Target: 5'- gUCUGGGUUcGCGgcCCGGCGC-GGGCCUc -3' miRNA: 3'- -AGACCUGA-CGUa-GGUCGCGaCCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 73698 | 0.66 | 0.840794 |
Target: 5'- --cGGcuCUGCG-CCGcGUGCUGGGCCa -3' miRNA: 3'- agaCCu-GACGUaGGU-CGCGACCUGGg -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 66339 | 0.66 | 0.806024 |
Target: 5'- cCUGGGCgacGCGaCgCGGCGCUacuacgcGGACCUc -3' miRNA: 3'- aGACCUGa--CGUaG-GUCGCGA-------CCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 65826 | 0.67 | 0.761074 |
Target: 5'- -aUGGGCgGCcgcgCCAGCGC-GG-CCCg -3' miRNA: 3'- agACCUGaCGua--GGUCGCGaCCuGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 63695 | 0.66 | 0.824197 |
Target: 5'- aCUGGGCgUGCGcguUCgCGGCGacgUGGcGCCCg -3' miRNA: 3'- aGACCUG-ACGU---AG-GUCGCg--ACC-UGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 61867 | 0.66 | 0.806906 |
Target: 5'- gCUcGGC-GCGUCU-GCGcCUGGACCCu -3' miRNA: 3'- aGAcCUGaCGUAGGuCGC-GACCUGGG- -5' |
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29487 | 5' | -57.5 | NC_006151.1 | + | 57157 | 0.66 | 0.824197 |
Target: 5'- --gGGGCgaggGCGUCCcccGGCGC-GG-CCCa -3' miRNA: 3'- agaCCUGa---CGUAGG---UCGCGaCCuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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