miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 5' -57.5 NC_006151.1 + 66339 0.66 0.806024
Target:  5'- cCUGGGCgacGCGaCgCGGCGCUacuacgcGGACCUc -3'
miRNA:   3'- aGACCUGa--CGUaG-GUCGCGA-------CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 105423 0.66 0.806024
Target:  5'- uUCgugGGGC-GCAUCgagagcaaguacuCGGCGCgcgccgGGGCCCu -3'
miRNA:   3'- -AGa--CCUGaCGUAG-------------GUCGCGa-----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 82623 0.67 0.79802
Target:  5'- --cGGGCgccGCggUgGGCGCgGGACCCc -3'
miRNA:   3'- agaCCUGa--CGuaGgUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 39279 0.67 0.79802
Target:  5'- --gGGuGCUGCugcUCuCGGCGCgGGACCUc -3'
miRNA:   3'- agaCC-UGACGu--AG-GUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 21367 0.67 0.79802
Target:  5'- --cGGGCUGCggCCAccCGCUGGGCa- -3'
miRNA:   3'- agaCCUGACGuaGGUc-GCGACCUGgg -5'
29487 5' -57.5 NC_006151.1 + 49250 0.67 0.795325
Target:  5'- gCUGGGCgcgGCucgugcgcgccgucGUCCAGCGgcuCUGcgaGACCCg -3'
miRNA:   3'- aGACCUGa--CG--------------UAGGUCGC---GAC---CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 51400 0.67 0.788985
Target:  5'- --gGGGCgagcGCGUCgCAGCGCgUGcACCCg -3'
miRNA:   3'- agaCCUGa---CGUAG-GUCGCG-ACcUGGG- -5'
29487 5' -57.5 NC_006151.1 + 137806 0.67 0.788985
Target:  5'- --gGGACUuCAUCgAGCccaUGGGCCCg -3'
miRNA:   3'- agaCCUGAcGUAGgUCGcg-ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 134609 0.67 0.77981
Target:  5'- cCUGGAgU-CGggCCAGCGCgUGG-CCCa -3'
miRNA:   3'- aGACCUgAcGUa-GGUCGCG-ACCuGGG- -5'
29487 5' -57.5 NC_006151.1 + 129779 0.67 0.77981
Target:  5'- --aGGGCgucGCucccgCCGGCG-UGGGCCCg -3'
miRNA:   3'- agaCCUGa--CGua---GGUCGCgACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 100335 0.67 0.77981
Target:  5'- cCUGGGCacgugGCGUCUGGCGgacgucgUGGACgCCg -3'
miRNA:   3'- aGACCUGa----CGUAGGUCGCg------ACCUG-GG- -5'
29487 5' -57.5 NC_006151.1 + 138286 0.67 0.778885
Target:  5'- aCUGGGuccucuuccagcuCUGCggGUCCGcGCGCUucagcugccugcGGGCCCg -3'
miRNA:   3'- aGACCU-------------GACG--UAGGU-CGCGA------------CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 113427 0.67 0.770504
Target:  5'- gCUGGcGCUGCGccgcuUCCGGCGC-GGcguGCUCa -3'
miRNA:   3'- aGACC-UGACGU-----AGGUCGCGaCC---UGGG- -5'
29487 5' -57.5 NC_006151.1 + 65826 0.67 0.761074
Target:  5'- -aUGGGCgGCcgcgCCAGCGC-GG-CCCg -3'
miRNA:   3'- agACCUGaCGua--GGUCGCGaCCuGGG- -5'
29487 5' -57.5 NC_006151.1 + 15036 0.67 0.761074
Target:  5'- --aGGuGC-GCGUCCacGGCGCgcgGGGCCCc -3'
miRNA:   3'- agaCC-UGaCGUAGG--UCGCGa--CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 80685 0.67 0.761074
Target:  5'- gUCUGGGUUcGCGgcCCGGCGC-GGGCCUc -3'
miRNA:   3'- -AGACCUGA-CGUa-GGUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 102501 0.68 0.751531
Target:  5'- -aUGGAC-GCcg-CGGCGCgGGACCCc -3'
miRNA:   3'- agACCUGaCGuagGUCGCGaCCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 39508 0.68 0.741884
Target:  5'- gCUGGACUcuaGC-UCCAuCG-UGGGCCCg -3'
miRNA:   3'- aGACCUGA---CGuAGGUcGCgACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 85233 0.68 0.712407
Target:  5'- cCUGGACgcGCugagCCAgGCGCUGG-CCg -3'
miRNA:   3'- aGACCUGa-CGua--GGU-CGCGACCuGGg -5'
29487 5' -57.5 NC_006151.1 + 31206 0.68 0.712407
Target:  5'- -gUGGcCcGCGUCCAG-GCcGGGCCCc -3'
miRNA:   3'- agACCuGaCGUAGGUCgCGaCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.