miRNA display CGI


Results 121 - 140 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 29229 0.7 0.447303
Target:  5'- --gUCACCGCCGggucgGCCgCGC-CCCGa -3'
miRNA:   3'- gagAGUGGUGGCaa---CGGgGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 131553 0.7 0.447303
Target:  5'- cCUCgggCGCCGCaCGg-GCCCCGCGUCg- -3'
miRNA:   3'- -GAGa--GUGGUG-GCaaCGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 36798 0.71 0.379564
Target:  5'- aCUCcacCACCACCGUcGCCgucgagaCCGuCGCCCGc -3'
miRNA:   3'- -GAGa--GUGGUGGCAaCGG-------GGC-GCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 36609 0.71 0.372473
Target:  5'- cCUCcccCGCCGCCGggccgGUCUCgGCGCCCGg -3'
miRNA:   3'- -GAGa--GUGGUGGCaa---CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 27209 0.71 0.364699
Target:  5'- ----aGgCGCCGggGCCCCGCGCgCCGu -3'
miRNA:   3'- gagagUgGUGGCaaCGGGGCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 16891 0.71 0.364699
Target:  5'- -gCUCGCguCCGUUGCC--GCGCCCGc -3'
miRNA:   3'- gaGAGUGguGGCAACGGggCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 108007 0.71 0.357039
Target:  5'- ---cCACCGCCGccGCCaccaCCGCGCCCa -3'
miRNA:   3'- gagaGUGGUGGCaaCGG----GGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 56529 0.71 0.357039
Target:  5'- cCUCuUCGCCGCCGgguucggGCCCC-UGCUCGg -3'
miRNA:   3'- -GAG-AGUGGUGGCaa-----CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 62684 0.71 0.380358
Target:  5'- uCUCUCGCCGCCccugucccuuGUccccggucccGCCCCGCcGCCCu -3'
miRNA:   3'- -GAGAGUGGUGG----------CAa---------CGGGGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 81328 0.71 0.380358
Target:  5'- cCUC-CGCCcccucguCCGUcgccGCCgCCGCGCCCGg -3'
miRNA:   3'- -GAGaGUGGu------GGCAa---CGG-GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107587 0.71 0.39646
Target:  5'- aCUCcCGCCGCCaagcugGCCCCGCcggcgccgccGCCCGc -3'
miRNA:   3'- -GAGaGUGGUGGcaa---CGGGGCG----------CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 73970 0.71 0.388354
Target:  5'- --gUgGCCACCGUgGCcaugCCCGCGUCCGg -3'
miRNA:   3'- gagAgUGGUGGCAaCG----GGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 99520 0.71 0.388354
Target:  5'- ---gCGCCACUGcaugGCgCCGCGCCCGc -3'
miRNA:   3'- gagaGUGGUGGCaa--CGgGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 23110 0.71 0.388354
Target:  5'- -cCUCGuCCuCCucgGCCCCGCGCCCc -3'
miRNA:   3'- gaGAGU-GGuGGcaaCGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 118969 0.71 0.385944
Target:  5'- gCUCgUCGCCGCCGgcgUGuacgacgaggagccCCCCGCGCUgGa -3'
miRNA:   3'- -GAG-AGUGGUGGCa--AC--------------GGGGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 87097 0.71 0.380358
Target:  5'- -cCUCGCCGCCGUgGUCUCGuCGCuCCa -3'
miRNA:   3'- gaGAGUGGUGGCAaCGGGGC-GCG-GGc -5'
29488 3' -61.6 NC_006151.1 + 107526 0.72 0.334741
Target:  5'- -gCUC-CCGCCGUUgGCCCCGgCgGCCCc -3'
miRNA:   3'- gaGAGuGGUGGCAA-CGGGGC-G-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 78689 0.72 0.327539
Target:  5'- gCUCUaCGCCgGCCGggGCCUCGuCGCCgCGa -3'
miRNA:   3'- -GAGA-GUGG-UGGCaaCGGGGC-GCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 12824 0.72 0.320452
Target:  5'- cCUCUCcCCGCCGcc-CCCCGCGgCCa -3'
miRNA:   3'- -GAGAGuGGUGGCaacGGGGCGCgGGc -5'
29488 3' -61.6 NC_006151.1 + 120878 0.72 0.320452
Target:  5'- gCUC-CGCU-CCGUcaugGCCUCGCGCCCGc -3'
miRNA:   3'- -GAGaGUGGuGGCAa---CGGGGCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.