Results 81 - 100 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29488 | 3' | -61.6 | NC_006151.1 | + | 1676 | 0.68 | 0.558526 |
Target: 5'- cCUC-CGCCGCCGa-GCCCUcCGCCgCGg -3' miRNA: 3'- -GAGaGUGGUGGCaaCGGGGcGCGG-GC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 69482 | 0.68 | 0.558526 |
Target: 5'- --gUCGCCGCCGccucgagcGcCCCCGCGCCg- -3' miRNA: 3'- gagAGUGGUGGCaa------C-GGGGCGCGGgc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 112436 | 0.68 | 0.568214 |
Target: 5'- ---gCGCCGCCGccGCCgCGCGCCa- -3' miRNA: 3'- gagaGUGGUGGCaaCGGgGCGCGGgc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 139150 | 0.68 | 0.539297 |
Target: 5'- gUCUUcCCGCUGUacgCCCGCGCCCu -3' miRNA: 3'- gAGAGuGGUGGCAacgGGGCGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 109449 | 0.67 | 0.61716 |
Target: 5'- -cUUCGCgGCCG--GCCCCGaCGCCgGa -3' miRNA: 3'- gaGAGUGgUGGCaaCGGGGC-GCGGgC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 87306 | 0.67 | 0.621097 |
Target: 5'- -cCUCGCCcguggcgcacgccguGCCGgcGCuCCCGgGCCUGc -3' miRNA: 3'- gaGAGUGG---------------UGGCaaCG-GGGCgCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 77193 | 0.67 | 0.625036 |
Target: 5'- gUC-CGCCGCCGcguccuccauCCCCGCGCCg- -3' miRNA: 3'- gAGaGUGGUGGCaac-------GGGGCGCGGgc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 135191 | 0.67 | 0.627006 |
Target: 5'- ---cCGCCGCCGggccaGUCCCaGCGUCCGc -3' miRNA: 3'- gagaGUGGUGGCaa---CGGGG-CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 140417 | 0.67 | 0.627006 |
Target: 5'- -aCUCGCCcgucccGCUGgaggaguacgUGCCCgGCGCCUGc -3' miRNA: 3'- gaGAGUGG------UGGCa---------ACGGGgCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 62446 | 0.67 | 0.627006 |
Target: 5'- gUCcgCGCCugCaucGCCcaCCGCGCCCGg -3' miRNA: 3'- gAGa-GUGGugGcaaCGG--GGCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 61428 | 0.67 | 0.61716 |
Target: 5'- -cCUCGgccCCGCCGcgGCgcccgCCCGCGUCCGc -3' miRNA: 3'- gaGAGU---GGUGGCaaCG-----GGGCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 110175 | 0.67 | 0.61716 |
Target: 5'- -gCUCAUCGCCGcgUGCCgCCugauaGCGCgCCGc -3' miRNA: 3'- gaGAGUGGUGGCa-ACGG-GG-----CGCG-GGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 52583 | 0.67 | 0.61716 |
Target: 5'- -aCUCGgCGCUGccGCCCUGCGCgUGg -3' miRNA: 3'- gaGAGUgGUGGCaaCGGGGCGCGgGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 108893 | 0.67 | 0.616175 |
Target: 5'- gCUCUUguuCCGcgaaggcCCGUaucgGCCCCGCGCCa- -3' miRNA: 3'- -GAGAGu--GGU-------GGCAa---CGGGGCGCGGgc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 109374 | 0.67 | 0.626021 |
Target: 5'- cCUCUuccgcccccgccgCACCACCGccgGCCCCaccaccuucGCGgCCGg -3' miRNA: 3'- -GAGA-------------GUGGUGGCaa-CGGGG---------CGCgGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 137421 | 0.67 | 0.615191 |
Target: 5'- -cCUCGCCGCCGccgcgggguccGCCuCCGCGgCCu -3' miRNA: 3'- gaGAGUGGUGGCaa---------CGG-GGCGCgGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 107838 | 0.67 | 0.607324 |
Target: 5'- ---cCGCCcuacCCGgcgacgGCCCCgGCGCCCGa -3' miRNA: 3'- gagaGUGGu---GGCaa----CGGGG-CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 81772 | 0.67 | 0.607324 |
Target: 5'- ---gCGCCACCGggacgcGCUCggCGCGCCCGu -3' miRNA: 3'- gagaGUGGUGGCaa----CGGG--GCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 73111 | 0.67 | 0.607324 |
Target: 5'- -cCUCGCCGgCGgcGCgCCCGCGCg-- -3' miRNA: 3'- gaGAGUGGUgGCaaCG-GGGCGCGggc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 32647 | 0.67 | 0.607324 |
Target: 5'- -cCUCGCCGCCGgccccuuCCCCGUuucCCCGu -3' miRNA: 3'- gaGAGUGGUGGCaac----GGGGCGc--GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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