miRNA display CGI


Results 101 - 120 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 12092 0.67 0.607324
Target:  5'- uCUCUCAcCCGCCc---UCCCGCGCUCu -3'
miRNA:   3'- -GAGAGU-GGUGGcaacGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 69757 0.67 0.597505
Target:  5'- ----gACCGCCGggGCCaCGCGCCgCGc -3'
miRNA:   3'- gagagUGGUGGCaaCGGgGCGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 58742 0.67 0.597505
Target:  5'- gUCgcgCAgCGCCGcgGCCaCCGCGgCCGc -3'
miRNA:   3'- gAGa--GUgGUGGCaaCGG-GGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 38795 0.67 0.597505
Target:  5'- gCUCggGCCcaugcCCGagcaCCCCGCGCCCGa -3'
miRNA:   3'- -GAGagUGGu----GGCaac-GGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 87507 0.67 0.58771
Target:  5'- uUCagGCCGCC---GCCCCggccGCGCCCGc -3'
miRNA:   3'- gAGagUGGUGGcaaCGGGG----CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 141900 0.67 0.58771
Target:  5'- gCUC-CACCuCCacgcGCCCCGCGgCCGu -3'
miRNA:   3'- -GAGaGUGGuGGcaa-CGGGGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 86178 0.67 0.627006
Target:  5'- aUCgUgGCCGCCGcgcUGCCCCcggcGgGCCCGc -3'
miRNA:   3'- gAG-AgUGGUGGCa--ACGGGG----CgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107838 0.67 0.607324
Target:  5'- ---cCGCCcuacCCGgcgacgGCCCCgGCGCCCGa -3'
miRNA:   3'- gagaGUGGu---GGCaa----CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 114664 0.67 0.576969
Target:  5'- -cCUCGCCcgugagcGCCGcgaagGCCUCGUGCUCGa -3'
miRNA:   3'- gaGAGUGG-------UGGCaa---CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 38888 0.67 0.576969
Target:  5'- -cCUCGCCGCCuacUGCccgcccgagguggCCCGCGCCuCGu -3'
miRNA:   3'- gaGAGUGGUGGca-ACG-------------GGGCGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 107106 0.67 0.577944
Target:  5'- gCUCUgggCGCCGCCcgaGCCgCCGCgacGCCCGg -3'
miRNA:   3'- -GAGA---GUGGUGGcaaCGG-GGCG---CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 117904 0.67 0.577944
Target:  5'- cCUCUCucuucaccccGCCGCCGga--CCCGUccGCCCGg -3'
miRNA:   3'- -GAGAG----------UGGUGGCaacgGGGCG--CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 24406 0.66 0.685908
Target:  5'- gUCUCGaagagCACCac--CCCCGCGCCCc -3'
miRNA:   3'- gAGAGUg----GUGGcaacGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 52395 0.66 0.676149
Target:  5'- ----gGCgGCgGgcGCCgCCGCGCCCGa -3'
miRNA:   3'- gagagUGgUGgCaaCGG-GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 104382 0.66 0.675171
Target:  5'- gCUCUCGCggcuggcccgcauCGCCGgcggcgUGCuggCCCGCGCCg- -3'
miRNA:   3'- -GAGAGUG-------------GUGGCa-----ACG---GGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 52359 0.66 0.656539
Target:  5'- gUCgUCGuCCGCCGgcgcGCCCCcgGgGCCCGc -3'
miRNA:   3'- gAG-AGU-GGUGGCaa--CGGGG--CgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 31339 0.66 0.656539
Target:  5'- -cCUCGgCGCCGUggGCCcgaccccgguCCGCGCCgGc -3'
miRNA:   3'- gaGAGUgGUGGCAa-CGG----------GGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 2952 0.66 0.656539
Target:  5'- aCUCcacggCGCCggcgaaGCCGagGUCCCGCGCCg- -3'
miRNA:   3'- -GAGa----GUGG------UGGCaaCGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 108048 0.66 0.656539
Target:  5'- -aCUCAgCCGCCGa---CCCGgGCCCa -3'
miRNA:   3'- gaGAGU-GGUGGCaacgGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 37344 0.66 0.656539
Target:  5'- -gCUCACC-CCGcucggggaGCCCUG-GCCCGg -3'
miRNA:   3'- gaGAGUGGuGGCaa------CGGGGCgCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.