Results 121 - 140 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29488 | 3' | -61.6 | NC_006151.1 | + | 24406 | 0.66 | 0.685908 |
Target: 5'- gUCUCGaagagCACCac--CCCCGCGCCCc -3' miRNA: 3'- gAGAGUg----GUGGcaacGGGGCGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 63802 | 0.66 | 0.685908 |
Target: 5'- gUCgccagCGCCucGCCGg-GCCCCgggGCGCCCu -3' miRNA: 3'- gAGa----GUGG--UGGCaaCGGGG---CGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 37220 | 0.66 | 0.685908 |
Target: 5'- cCUC-CGCCGCgGccuccccgGCCCCGgccccggagccCGCCCGg -3' miRNA: 3'- -GAGaGUGGUGgCaa------CGGGGC-----------GCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 71613 | 0.66 | 0.685908 |
Target: 5'- cCUC-CACCACCGcgGCCUUcuCGCCgGg -3' miRNA: 3'- -GAGaGUGGUGGCaaCGGGGc-GCGGgC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 56214 | 0.66 | 0.666357 |
Target: 5'- ---gCACCGCCug-GCCCUgguGCGCCCc -3' miRNA: 3'- gagaGUGGUGGcaaCGGGG---CGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 32055 | 0.66 | 0.656539 |
Target: 5'- cCUCUgcaGCCGCCGcccGCgCCGCGaCCGg -3' miRNA: 3'- -GAGAg--UGGUGGCaa-CGgGGCGCgGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 120327 | 0.66 | 0.656539 |
Target: 5'- cCUCUCGgaCGCCGcgcGCgCCCGCGUggCCGg -3' miRNA: 3'- -GAGAGUg-GUGGCaa-CG-GGGCGCG--GGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 31339 | 0.66 | 0.656539 |
Target: 5'- -cCUCGgCGCCGUggGCCcgaccccgguCCGCGCCgGc -3' miRNA: 3'- gaGAGUgGUGGCAa-CGG----------GGCGCGGgC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 45527 | 0.66 | 0.633901 |
Target: 5'- gUCgaccCACCGCgGgaggGCCCgcuucccacgacggCGCGCCCGg -3' miRNA: 3'- gAGa---GUGGUGgCaa--CGGG--------------GCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 45717 | 0.66 | 0.633901 |
Target: 5'- uCUCUCggagacggacgaccACCGCCGagGCuUCCaGCGCCUGg -3' miRNA: 3'- -GAGAG--------------UGGUGGCaaCG-GGG-CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 91788 | 0.66 | 0.633901 |
Target: 5'- --aUCACCGCCcggcuuauaugcgcGggaUGCCCCGC-CCCGc -3' miRNA: 3'- gagAGUGGUGG--------------Ca--ACGGGGCGcGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 98052 | 0.66 | 0.636856 |
Target: 5'- ---gCACCACCa--GCCCCggGCGCUCGg -3' miRNA: 3'- gagaGUGGUGGcaaCGGGG--CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 78491 | 0.66 | 0.636856 |
Target: 5'- gCUCgugaaCGCCGCCGUggugcacGcCCCCGCGaucgcggaCCCGg -3' miRNA: 3'- -GAGa----GUGGUGGCAa------C-GGGGCGC--------GGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 51461 | 0.66 | 0.636856 |
Target: 5'- -aCUCGCaCACgGUcUGCCCacagcccgacUGCGCCCa -3' miRNA: 3'- gaGAGUG-GUGgCA-ACGGG----------GCGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 118351 | 0.66 | 0.636856 |
Target: 5'- uCUCgcgCGCCugCGagGCggCgCGCGCCCGc -3' miRNA: 3'- -GAGa--GUGGugGCaaCG--GgGCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 5877 | 0.66 | 0.656539 |
Target: 5'- ----gGCCGCCGgggGCCCCG-GCCUc -3' miRNA: 3'- gagagUGGUGGCaa-CGGGGCgCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 108048 | 0.66 | 0.656539 |
Target: 5'- -aCUCAgCCGCCGa---CCCGgGCCCa -3' miRNA: 3'- gaGAGU-GGUGGCaacgGGGCgCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 2952 | 0.66 | 0.656539 |
Target: 5'- aCUCcacggCGCCggcgaaGCCGagGUCCCGCGCCg- -3' miRNA: 3'- -GAGa----GUGG------UGGCaaCGGGGCGCGGgc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 52359 | 0.66 | 0.656539 |
Target: 5'- gUCgUCGuCCGCCGgcgcGCCCCcgGgGCCCGc -3' miRNA: 3'- gAG-AGU-GGUGGCaa--CGGGG--CgCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 76874 | 0.66 | 0.656539 |
Target: 5'- ---cCGCCGCCaGgaGCCCCaGCGCCg- -3' miRNA: 3'- gagaGUGGUGG-CaaCGGGG-CGCGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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