miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 69482 0.68 0.558526
Target:  5'- --gUCGCCGCCGccucgagcGcCCCCGCGCCg- -3'
miRNA:   3'- gagAGUGGUGGCaa------C-GGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 45792 0.68 0.548886
Target:  5'- -cCUCGCCACCGccGCa--GCGCCUGu -3'
miRNA:   3'- gaGAGUGGUGGCaaCGgggCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 134316 0.68 0.548886
Target:  5'- ---aCGCCGCUGc-GCCUCGCGCCgGg -3'
miRNA:   3'- gagaGUGGUGGCaaCGGGGCGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 69440 0.68 0.548886
Target:  5'- ---cCGCCGCCGUUcgcGUCCuCGCGCgCCGc -3'
miRNA:   3'- gagaGUGGUGGCAA---CGGG-GCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 48708 0.68 0.547924
Target:  5'- cCUC-CGCCGCCGcccgGCCCgCGaagggcaCGCCCGc -3'
miRNA:   3'- -GAGaGUGGUGGCaa--CGGG-GC-------GCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 38291 0.68 0.546003
Target:  5'- gCUCgccgagGCCGCCGcgcgGCccgggcccgcggagCCCGCGCCCGg -3'
miRNA:   3'- -GAGag----UGGUGGCaa--CG--------------GGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 60607 0.68 0.539297
Target:  5'- cCUC-CACCGCCGUcGUCgCCGcCGCCg- -3'
miRNA:   3'- -GAGaGUGGUGGCAaCGG-GGC-GCGGgc -5'
29488 3' -61.6 NC_006151.1 + 86983 0.68 0.539297
Target:  5'- ---cCACCGCCGcucGCCCU-CGCCCGa -3'
miRNA:   3'- gagaGUGGUGGCaa-CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 139150 0.68 0.539297
Target:  5'- gUCUUcCCGCUGUacgCCCGCGCCCu -3'
miRNA:   3'- gAGAGuGGUGGCAacgGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 32552 0.68 0.539297
Target:  5'- cCUUUCGCUcCCGUcucccggGCaCCCGCGgCCGg -3'
miRNA:   3'- -GAGAGUGGuGGCAa------CG-GGGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 84185 0.68 0.539297
Target:  5'- -cCUCGCCGCCGccgUGCCCCcggGCGgCg- -3'
miRNA:   3'- gaGAGUGGUGGCa--ACGGGG---CGCgGgc -5'
29488 3' -61.6 NC_006151.1 + 12933 0.68 0.520298
Target:  5'- uCUCUC-CCGCCGgUGUuuuCCCaCGCCCa -3'
miRNA:   3'- -GAGAGuGGUGGCaACG---GGGcGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 14889 0.68 0.520298
Target:  5'- uUCUCGCCcgucgacccGCCcggGCCCCG-GCCCa -3'
miRNA:   3'- gAGAGUGG---------UGGcaaCGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 109117 0.68 0.520298
Target:  5'- ----aGCCGCCGg---CCCGCGCCCGc -3'
miRNA:   3'- gagagUGGUGGCaacgGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 8711 0.68 0.520298
Target:  5'- gUCUCcgucuCCGCCGUcGCCUCG-GUCCGa -3'
miRNA:   3'- gAGAGu----GGUGGCAaCGGGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 34065 0.68 0.520298
Target:  5'- uCUCccggagCGCCcCCGggGUCCCG-GCCCGa -3'
miRNA:   3'- -GAGa-----GUGGuGGCaaCGGGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 25398 0.68 0.510897
Target:  5'- uUCUCgACCgcgacgggggcGCCGccGCCCCacgcGCGCCCGu -3'
miRNA:   3'- gAGAG-UGG-----------UGGCaaCGGGG----CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 137255 0.69 0.501567
Target:  5'- aCUUUCGCC-UCGcgcGCCCgGUGCCCGc -3'
miRNA:   3'- -GAGAGUGGuGGCaa-CGGGgCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37931 0.69 0.493235
Target:  5'- -cUUCGCCGCCGcgcagcccggccgcgUGCCCCGCGagCUGg -3'
miRNA:   3'- gaGAGUGGUGGCa--------------ACGGGGCGCg-GGC- -5'
29488 3' -61.6 NC_006151.1 + 66563 0.69 0.492313
Target:  5'- ---gCGCCGCCGUgGaCCCgGCGCUCGc -3'
miRNA:   3'- gagaGUGGUGGCAaC-GGGgCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.