miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 48193 0.69 0.456126
Target:  5'- aUCUUcgaGCCGCCGgucaCgCCCGCGCCCc -3'
miRNA:   3'- gAGAG---UGGUGGCaac-G-GGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 48708 0.68 0.547924
Target:  5'- cCUC-CGCCGCCGcccgGCCCgCGaagggcaCGCCCGc -3'
miRNA:   3'- -GAGaGUGGUGGCaa--CGGG-GC-------GCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 50666 0.66 0.666357
Target:  5'- gUCgugCGCgGCCGcacCCCCGCGCCg- -3'
miRNA:   3'- gAGa--GUGgUGGCaacGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 50830 0.69 0.456126
Target:  5'- cCUCggcccgCGCCGCCGUccccucgGCggccgcccuCCCGCGCCCc -3'
miRNA:   3'- -GAGa-----GUGGUGGCAa------CG---------GGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 51461 0.66 0.636856
Target:  5'- -aCUCGCaCACgGUcUGCCCacagcccgacUGCGCCCa -3'
miRNA:   3'- gaGAGUG-GUGgCA-ACGGG----------GCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 51654 0.69 0.474046
Target:  5'- -gCUCGCUgauGCCGUUGUCCCGCucggGCUCc -3'
miRNA:   3'- gaGAGUGG---UGGCAACGGGGCG----CGGGc -5'
29488 3' -61.6 NC_006151.1 + 52359 0.66 0.656539
Target:  5'- gUCgUCGuCCGCCGgcgcGCCCCcgGgGCCCGc -3'
miRNA:   3'- gAG-AGU-GGUGGCaa--CGGGG--CgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 52395 0.66 0.676149
Target:  5'- ----gGCgGCgGgcGCCgCCGCGCCCGa -3'
miRNA:   3'- gagagUGgUGgCaaCGG-GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 52482 0.66 0.666357
Target:  5'- ----gGCCGCCGUgacgGCCUCGggcgccaGCCCGg -3'
miRNA:   3'- gagagUGGUGGCAa---CGGGGCg------CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 52583 0.67 0.61716
Target:  5'- -aCUCGgCGCUGccGCCCUGCGCgUGg -3'
miRNA:   3'- gaGAGUgGUGGCaaCGGGGCGCGgGC- -5'
29488 3' -61.6 NC_006151.1 + 55454 0.69 0.465041
Target:  5'- ---gCGCCGCCG--GCCCCGCcggggggcgcgcGCCCGg -3'
miRNA:   3'- gagaGUGGUGGCaaCGGGGCG------------CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 56214 0.66 0.666357
Target:  5'- ---gCACCGCCug-GCCCUgguGCGCCCc -3'
miRNA:   3'- gagaGUGGUGGcaaCGGGG---CGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 56529 0.71 0.357039
Target:  5'- cCUCuUCGCCGCCGgguucggGCCCC-UGCUCGg -3'
miRNA:   3'- -GAG-AGUGGUGGCaa-----CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 58561 0.69 0.474046
Target:  5'- cCUCuUCGCCGCCGccGCCCgccggcguCGCGgCCGu -3'
miRNA:   3'- -GAG-AGUGGUGGCaaCGGG--------GCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 58742 0.67 0.597505
Target:  5'- gUCgcgCAgCGCCGcgGCCaCCGCGgCCGc -3'
miRNA:   3'- gAGa--GUgGUGGCaaCGG-GGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 59442 0.66 0.685908
Target:  5'- gUCggcCGCCGCCGccGCgaCCGCGgCCGa -3'
miRNA:   3'- gAGa--GUGGUGGCaaCGg-GGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 60607 0.68 0.539297
Target:  5'- cCUC-CACCGCCGUcGUCgCCGcCGCCg- -3'
miRNA:   3'- -GAGaGUGGUGGCAaCGG-GGC-GCGGgc -5'
29488 3' -61.6 NC_006151.1 + 60677 0.73 0.299883
Target:  5'- gUCgcCGCCGCCGUccuCCCgCGCGCCCGc -3'
miRNA:   3'- gAGa-GUGGUGGCAac-GGG-GCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 61428 0.67 0.61716
Target:  5'- -cCUCGgccCCGCCGcgGCgcccgCCCGCGUCCGc -3'
miRNA:   3'- gaGAGU---GGUGGCaaCG-----GGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 62446 0.67 0.627006
Target:  5'- gUCcgCGCCugCaucGCCcaCCGCGCCCGg -3'
miRNA:   3'- gAGa-GUGGugGcaaCGG--GGCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.