miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 62684 0.71 0.380358
Target:  5'- uCUCUCGCCGCCccugucccuuGUccccggucccGCCCCGCcGCCCu -3'
miRNA:   3'- -GAGAGUGGUGG----------CAa---------CGGGGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 63802 0.66 0.685908
Target:  5'- gUCgccagCGCCucGCCGg-GCCCCgggGCGCCCu -3'
miRNA:   3'- gAGa----GUGG--UGGCaaCGGGG---CGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 64162 0.66 0.646703
Target:  5'- cCUCcuUCGCC-CCGU--CCCCGCcCCCGu -3'
miRNA:   3'- -GAG--AGUGGuGGCAacGGGGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 66563 0.69 0.492313
Target:  5'- ---gCGCCGCCGUgGaCCCgGCGCUCGc -3'
miRNA:   3'- gagaGUGGUGGCAaC-GGGgCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 69440 0.68 0.548886
Target:  5'- ---cCGCCGCCGUUcgcGUCCuCGCGCgCCGc -3'
miRNA:   3'- gagaGUGGUGGCAA---CGGG-GCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 69482 0.68 0.558526
Target:  5'- --gUCGCCGCCGccucgagcGcCCCCGCGCCg- -3'
miRNA:   3'- gagAGUGGUGGCaa------C-GGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 69515 0.66 0.637841
Target:  5'- cCUC-CGCCGCCGcgccgcgcgagggcGCCCUGCaucaGCCCGc -3'
miRNA:   3'- -GAGaGUGGUGGCaa------------CGGGGCG----CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 69626 0.67 0.627006
Target:  5'- aUCUCGCgGUCGgcGUCCCGCGCgUGc -3'
miRNA:   3'- gAGAGUGgUGGCaaCGGGGCGCGgGC- -5'
29488 3' -61.6 NC_006151.1 + 69757 0.67 0.597505
Target:  5'- ----gACCGCCGggGCCaCGCGCCgCGc -3'
miRNA:   3'- gagagUGGUGGCaaCGGgGCGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 71613 0.66 0.685908
Target:  5'- cCUC-CACCACCGcgGCCUUcuCGCCgGg -3'
miRNA:   3'- -GAGaGUGGUGGCaaCGGGGc-GCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 73111 0.67 0.607324
Target:  5'- -cCUCGCCGgCGgcGCgCCCGCGCg-- -3'
miRNA:   3'- gaGAGUGGUgGCaaCG-GGGCGCGggc -5'
29488 3' -61.6 NC_006151.1 + 73970 0.71 0.388354
Target:  5'- --gUgGCCACCGUgGCcaugCCCGCGUCCGg -3'
miRNA:   3'- gagAgUGGUGGCAaCG----GGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 76874 0.66 0.656539
Target:  5'- ---cCGCCGCCaGgaGCCCCaGCGCCg- -3'
miRNA:   3'- gagaGUGGUGG-CaaCGGGG-CGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 77193 0.67 0.625036
Target:  5'- gUC-CGCCGCCGcguccuccauCCCCGCGCCg- -3'
miRNA:   3'- gAGaGUGGUGGCaac-------GGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 78491 0.66 0.636856
Target:  5'- gCUCgugaaCGCCGCCGUggugcacGcCCCCGCGaucgcggaCCCGg -3'
miRNA:   3'- -GAGa----GUGGUGGCAa------C-GGGGCGC--------GGGC- -5'
29488 3' -61.6 NC_006151.1 + 78689 0.72 0.327539
Target:  5'- gCUCUaCGCCgGCCGggGCCUCGuCGCCgCGa -3'
miRNA:   3'- -GAGA-GUGG-UGGCaaCGGGGC-GCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 80554 0.69 0.456126
Target:  5'- aCUCUCGugaugucaucCCGCCGUcuCCCCgacggacgGCGCCCGu -3'
miRNA:   3'- -GAGAGU----------GGUGGCAacGGGG--------CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 80629 0.75 0.217339
Target:  5'- uCUCUCcCCccCCGUcucCCCCGCGCCCGa -3'
miRNA:   3'- -GAGAGuGGu-GGCAac-GGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 81328 0.71 0.380358
Target:  5'- cCUC-CGCCcccucguCCGUcgccGCCgCCGCGCCCGg -3'
miRNA:   3'- -GAGaGUGGu------GGCAa---CGG-GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 81772 0.67 0.607324
Target:  5'- ---gCGCCACCGggacgcGCUCggCGCGCCCGu -3'
miRNA:   3'- gagaGUGGUGGCaa----CGGG--GCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.