Results 141 - 157 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29488 | 3' | -61.6 | NC_006151.1 | + | 120327 | 0.66 | 0.656539 |
Target: 5'- cCUCUCGgaCGCCGcgcGCgCCCGCGUggCCGg -3' miRNA: 3'- -GAGAGUg-GUGGCaa-CG-GGGCGCG--GGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 120878 | 0.72 | 0.320452 |
Target: 5'- gCUC-CGCU-CCGUcaugGCCUCGCGCCCGc -3' miRNA: 3'- -GAGaGUGGuGGCAa---CGGGGCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 122413 | 0.76 | 0.179469 |
Target: 5'- -gCUCGCCGCCGUggacGCCgCCGagGCCCGg -3' miRNA: 3'- gaGAGUGGUGGCAa---CGG-GGCg-CGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 125193 | 0.74 | 0.238725 |
Target: 5'- -cCUCGCCGgCGUcguggGCCCCGCgGCCCc -3' miRNA: 3'- gaGAGUGGUgGCAa----CGGGGCG-CGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 131336 | 0.68 | 0.558526 |
Target: 5'- -cCUCACCcCCGcgccgGCCCC-CGCUCGu -3' miRNA: 3'- gaGAGUGGuGGCaa---CGGGGcGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 131553 | 0.7 | 0.447303 |
Target: 5'- cCUCgggCGCCGCaCGg-GCCCCGCGUCg- -3' miRNA: 3'- -GAGa--GUGGUG-GCaaCGGGGCGCGGgc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 134316 | 0.68 | 0.548886 |
Target: 5'- ---aCGCCGCUGc-GCCUCGCGCCgGg -3' miRNA: 3'- gagaGUGGUGGCaaCGGGGCGCGGgC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 135191 | 0.67 | 0.627006 |
Target: 5'- ---cCGCCGCCGggccaGUCCCaGCGUCCGc -3' miRNA: 3'- gagaGUGGUGGCaa---CGGGG-CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 135614 | 0.66 | 0.666357 |
Target: 5'- cCUCcCACgGCCGcgGCgCCCGCaccaCCCGg -3' miRNA: 3'- -GAGaGUGgUGGCaaCG-GGGCGc---GGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 136027 | 0.66 | 0.676149 |
Target: 5'- -cCUgACCAUgGUccucgagcaggUGCgCCCGCGCaCCGg -3' miRNA: 3'- gaGAgUGGUGgCA-----------ACG-GGGCGCG-GGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 136836 | 0.69 | 0.483138 |
Target: 5'- gCUCUgcgaCGCgGCCGccgGCCUCGCGCgCCGc -3' miRNA: 3'- -GAGA----GUGgUGGCaa-CGGGGCGCG-GGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 136870 | 0.69 | 0.456126 |
Target: 5'- --gUgACCGCCGUcgaggagcGCCUCGCGCCCc -3' miRNA: 3'- gagAgUGGUGGCAa-------CGGGGCGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 137255 | 0.69 | 0.501567 |
Target: 5'- aCUUUCGCC-UCGcgcGCCCgGUGCCCGc -3' miRNA: 3'- -GAGAGUGGuGGCaa-CGGGgCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 137421 | 0.67 | 0.615191 |
Target: 5'- -cCUCGCCGCCGccgcgggguccGCCuCCGCGgCCu -3' miRNA: 3'- gaGAGUGGUGGCaa---------CGG-GGCGCgGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 139150 | 0.68 | 0.539297 |
Target: 5'- gUCUUcCCGCUGUacgCCCGCGCCCu -3' miRNA: 3'- gAGAGuGGUGGCAacgGGGCGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 140417 | 0.67 | 0.627006 |
Target: 5'- -aCUCGCCcgucccGCUGgaggaguacgUGCCCgGCGCCUGc -3' miRNA: 3'- gaGAGUGG------UGGCa---------ACGGGgCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 141900 | 0.67 | 0.58771 |
Target: 5'- gCUC-CACCuCCacgcGCCCCGCGgCCGu -3' miRNA: 3'- -GAGaGUGGuGGcaa-CGGGGCGCgGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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