miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 104382 0.66 0.675171
Target:  5'- gCUCUCGCggcuggcccgcauCGCCGgcggcgUGCuggCCCGCGCCg- -3'
miRNA:   3'- -GAGAGUG-------------GUGGCa-----ACG---GGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 101832 0.69 0.474046
Target:  5'- gUCUCggcgGCCGCCGc--CCCCGC-CCCGg -3'
miRNA:   3'- gAGAG----UGGUGGCaacGGGGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 101646 0.72 0.349492
Target:  5'- -gUUCGCCGCCGUg--CCCGCGCUCu -3'
miRNA:   3'- gaGAGUGGUGGCAacgGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 99520 0.71 0.388354
Target:  5'- ---gCGCCACUGcaugGCgCCGCGCCCGc -3'
miRNA:   3'- gagaGUGGUGGCaa--CGgGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 98052 0.66 0.636856
Target:  5'- ---gCACCACCa--GCCCCggGCGCUCGg -3'
miRNA:   3'- gagaGUGGUGGcaaCGGGG--CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 97924 0.69 0.492313
Target:  5'- --gUCGCCGCCGagGCCgCGCccGCCCu -3'
miRNA:   3'- gagAGUGGUGGCaaCGGgGCG--CGGGc -5'
29488 3' -61.6 NC_006151.1 + 93082 0.69 0.465041
Target:  5'- gUCUCACCucuGCCGUccCCCCGcCGUCCc -3'
miRNA:   3'- gAGAGUGG---UGGCAacGGGGC-GCGGGc -5'
29488 3' -61.6 NC_006151.1 + 91788 0.66 0.633901
Target:  5'- --aUCACCGCCcggcuuauaugcgcGggaUGCCCCGC-CCCGc -3'
miRNA:   3'- gagAGUGGUGG--------------Ca--ACGGGGCGcGGGC- -5'
29488 3' -61.6 NC_006151.1 + 89215 0.77 0.158878
Target:  5'- -cCUCGCUGCUGUUGCCgCCGCcGCCCc -3'
miRNA:   3'- gaGAGUGGUGGCAACGG-GGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 87507 0.67 0.58771
Target:  5'- uUCagGCCGCC---GCCCCggccGCGCCCGc -3'
miRNA:   3'- gAGagUGGUGGcaaCGGGG----CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 87306 0.67 0.621097
Target:  5'- -cCUCGCCcguggcgcacgccguGCCGgcGCuCCCGgGCCUGc -3'
miRNA:   3'- gaGAGUGG---------------UGGCaaCG-GGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 87097 0.71 0.380358
Target:  5'- -cCUCGCCGCCGUgGUCUCGuCGCuCCa -3'
miRNA:   3'- gaGAGUGGUGGCAaCGGGGC-GCG-GGc -5'
29488 3' -61.6 NC_006151.1 + 86983 0.68 0.539297
Target:  5'- ---cCACCGCCGcucGCCCU-CGCCCGa -3'
miRNA:   3'- gagaGUGGUGGCaa-CGGGGcGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 86178 0.67 0.627006
Target:  5'- aUCgUgGCCGCCGcgcUGCCCCcggcGgGCCCGc -3'
miRNA:   3'- gAG-AgUGGUGGCa--ACGGGG----CgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 84185 0.68 0.539297
Target:  5'- -cCUCGCCGCCGccgUGCCCCcggGCGgCg- -3'
miRNA:   3'- gaGAGUGGUGGCa--ACGGGG---CGCgGgc -5'
29488 3' -61.6 NC_006151.1 + 83259 0.66 0.676149
Target:  5'- gUCgCGCCAgCGgcGCCCCGaGCUCa -3'
miRNA:   3'- gAGaGUGGUgGCaaCGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 82387 0.66 0.685908
Target:  5'- gUCgaagGCCACga--GCUCCGCGCCCGa -3'
miRNA:   3'- gAGag--UGGUGgcaaCGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 81772 0.67 0.607324
Target:  5'- ---gCGCCACCGggacgcGCUCggCGCGCCCGu -3'
miRNA:   3'- gagaGUGGUGGCaa----CGGG--GCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 81328 0.71 0.380358
Target:  5'- cCUC-CGCCcccucguCCGUcgccGCCgCCGCGCCCGg -3'
miRNA:   3'- -GAGaGUGGu------GGCAa---CGG-GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 80629 0.75 0.217339
Target:  5'- uCUCUCcCCccCCGUcucCCCCGCGCCCGa -3'
miRNA:   3'- -GAGAGuGGu-GGCAac-GGGGCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.