miRNA display CGI


Results 101 - 120 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 45717 0.66 0.633901
Target:  5'- uCUCUCggagacggacgaccACCGCCGagGCuUCCaGCGCCUGg -3'
miRNA:   3'- -GAGAG--------------UGGUGGCaaCG-GGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 45527 0.66 0.633901
Target:  5'- gUCgaccCACCGCgGgaggGCCCgcuucccacgacggCGCGCCCGg -3'
miRNA:   3'- gAGa---GUGGUGgCaa--CGGG--------------GCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 44969 1.08 0.001126
Target:  5'- cCUCUCACCACCGUUGCCCCGCGCCCGu -3'
miRNA:   3'- -GAGAGUGGUGGCAACGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 39973 0.69 0.483138
Target:  5'- --gUCGCCGCCGcgggcGCCCCGcCGgCCGu -3'
miRNA:   3'- gagAGUGGUGGCaa---CGGGGC-GCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 39839 0.7 0.429948
Target:  5'- gUCUCcugcgGCCGCCGggGCCUCGCcgagcuccgcgGCCCc -3'
miRNA:   3'- gAGAG-----UGGUGGCaaCGGGGCG-----------CGGGc -5'
29488 3' -61.6 NC_006151.1 + 39109 0.79 0.124298
Target:  5'- -gCUCugCGCCGagcccgccgagggcGCCCCGCGCCCGg -3'
miRNA:   3'- gaGAGugGUGGCaa------------CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 38888 0.67 0.576969
Target:  5'- -cCUCGCCGCCuacUGCccgcccgagguggCCCGCGCCuCGu -3'
miRNA:   3'- gaGAGUGGUGGca-ACG-------------GGGCGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 38795 0.67 0.597505
Target:  5'- gCUCggGCCcaugcCCGagcaCCCCGCGCCCGa -3'
miRNA:   3'- -GAGagUGGu----GGCaac-GGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 38524 0.7 0.429948
Target:  5'- gCUCcccCGCCGCCGgcccgGaCCCaGCGCCCGa -3'
miRNA:   3'- -GAGa--GUGGUGGCaa---C-GGGgCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 38291 0.68 0.546003
Target:  5'- gCUCgccgagGCCGCCGcgcgGCccgggcccgcggagCCCGCGCCCGg -3'
miRNA:   3'- -GAGag----UGGUGGCaa--CG--------------GGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37931 0.69 0.493235
Target:  5'- -cUUCGCCGCCGcgcagcccggccgcgUGCCCCGCGagCUGg -3'
miRNA:   3'- gaGAGUGGUGGCa--------------ACGGGGCGCg-GGC- -5'
29488 3' -61.6 NC_006151.1 + 37478 0.66 0.685908
Target:  5'- ---gCGCCGCgGccgGgCCCGUGCCCGu -3'
miRNA:   3'- gagaGUGGUGgCaa-CgGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37344 0.66 0.656539
Target:  5'- -gCUCACC-CCGcucggggaGCCCUG-GCCCGg -3'
miRNA:   3'- gaGAGUGGuGGCaa------CGGGGCgCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37299 0.68 0.558526
Target:  5'- cCUCUCGCUcaugGCCGacggGCCCC-CGCCg- -3'
miRNA:   3'- -GAGAGUGG----UGGCaa--CGGGGcGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 37220 0.66 0.685908
Target:  5'- cCUC-CGCCGCgGccuccccgGCCCCGgccccggagccCGCCCGg -3'
miRNA:   3'- -GAGaGUGGUGgCaa------CGGGGC-----------GCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37167 0.73 0.293257
Target:  5'- gUCUCcgccggcgcCCGCCGcgGCCCCGCgGCCCu -3'
miRNA:   3'- gAGAGu--------GGUGGCaaCGGGGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 36798 0.71 0.379564
Target:  5'- aCUCcacCACCACCGUcGCCgucgagaCCGuCGCCCGc -3'
miRNA:   3'- -GAGa--GUGGUGGCAaCGG-------GGC-GCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 36609 0.71 0.372473
Target:  5'- cCUCcccCGCCGCCGggccgGUCUCgGCGCCCGg -3'
miRNA:   3'- -GAGa--GUGGUGGCaa---CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 35848 0.68 0.558526
Target:  5'- uUCUcCGCCGCCcgcuCUCCGCGCUCGg -3'
miRNA:   3'- gAGA-GUGGUGGcaacGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 35065 0.66 0.646703
Target:  5'- gCUCgcuagCACCACgggggugggucgCGUgccgagcaugcGCCUCGCGCCCGc -3'
miRNA:   3'- -GAGa----GUGGUG------------GCAa----------CGGGGCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.