Results 121 - 140 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29488 | 3' | -61.6 | NC_006151.1 | + | 87507 | 0.67 | 0.58771 |
Target: 5'- uUCagGCCGCC---GCCCCggccGCGCCCGc -3' miRNA: 3'- gAGagUGGUGGcaaCGGGG----CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 141900 | 0.67 | 0.58771 |
Target: 5'- gCUC-CACCuCCacgcGCCCCGCGgCCGu -3' miRNA: 3'- -GAGaGUGGuGGcaa-CGGGGCGCgGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 109449 | 0.67 | 0.61716 |
Target: 5'- -cUUCGCgGCCG--GCCCCGaCGCCgGa -3' miRNA: 3'- gaGAGUGgUGGCaaCGGGGC-GCGGgC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 87306 | 0.67 | 0.621097 |
Target: 5'- -cCUCGCCcguggcgcacgccguGCCGgcGCuCCCGgGCCUGc -3' miRNA: 3'- gaGAGUGG---------------UGGCaaCG-GGGCgCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 77193 | 0.67 | 0.625036 |
Target: 5'- gUC-CGCCGCCGcguccuccauCCCCGCGCCg- -3' miRNA: 3'- gAGaGUGGUGGCaac-------GGGGCGCGGgc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 35065 | 0.66 | 0.646703 |
Target: 5'- gCUCgcuagCACCACgggggugggucgCGUgccgagcaugcGCCUCGCGCCCGc -3' miRNA: 3'- -GAGa----GUGGUG------------GCAa----------CGGGGCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 69515 | 0.66 | 0.637841 |
Target: 5'- cCUC-CGCCGCCGcgccgcgcgagggcGCCCUGCaucaGCCCGc -3' miRNA: 3'- -GAGaGUGGUGGCaa------------CGGGGCG----CGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 118351 | 0.66 | 0.636856 |
Target: 5'- uCUCgcgCGCCugCGagGCggCgCGCGCCCGc -3' miRNA: 3'- -GAGa--GUGGugGCaaCG--GgGCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 51461 | 0.66 | 0.636856 |
Target: 5'- -aCUCGCaCACgGUcUGCCCacagcccgacUGCGCCCa -3' miRNA: 3'- gaGAGUG-GUGgCA-ACGGG----------GCGCGGGc -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 78491 | 0.66 | 0.636856 |
Target: 5'- gCUCgugaaCGCCGCCGUggugcacGcCCCCGCGaucgcggaCCCGg -3' miRNA: 3'- -GAGa----GUGGUGGCAa------C-GGGGCGC--------GGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 98052 | 0.66 | 0.636856 |
Target: 5'- ---gCACCACCa--GCCCCggGCGCUCGg -3' miRNA: 3'- gagaGUGGUGGcaaCGGGG--CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 91788 | 0.66 | 0.633901 |
Target: 5'- --aUCACCGCCcggcuuauaugcgcGggaUGCCCCGC-CCCGc -3' miRNA: 3'- gagAGUGGUGG--------------Ca--ACGGGGCGcGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 45717 | 0.66 | 0.633901 |
Target: 5'- uCUCUCggagacggacgaccACCGCCGagGCuUCCaGCGCCUGg -3' miRNA: 3'- -GAGAG--------------UGGUGGCaaCG-GGG-CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 45527 | 0.66 | 0.633901 |
Target: 5'- gUCgaccCACCGCgGgaggGCCCgcuucccacgacggCGCGCCCGg -3' miRNA: 3'- gAGa---GUGGUGgCaa--CGGG--------------GCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 86178 | 0.67 | 0.627006 |
Target: 5'- aUCgUgGCCGCCGcgcUGCCCCcggcGgGCCCGc -3' miRNA: 3'- gAG-AgUGGUGGCa--ACGGGG----CgCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 69626 | 0.67 | 0.627006 |
Target: 5'- aUCUCGCgGUCGgcGUCCCGCGCgUGc -3' miRNA: 3'- gAGAGUGgUGGCaaCGGGGCGCGgGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 62446 | 0.67 | 0.627006 |
Target: 5'- gUCcgCGCCugCaucGCCcaCCGCGCCCGg -3' miRNA: 3'- gAGa-GUGGugGcaaCGG--GGCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 140417 | 0.67 | 0.627006 |
Target: 5'- -aCUCGCCcgucccGCUGgaggaguacgUGCCCgGCGCCUGc -3' miRNA: 3'- gaGAGUGG------UGGCa---------ACGGGgCGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 135191 | 0.67 | 0.627006 |
Target: 5'- ---cCGCCGCCGggccaGUCCCaGCGUCCGc -3' miRNA: 3'- gagaGUGGUGGCaa---CGGGG-CGCGGGC- -5' |
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29488 | 3' | -61.6 | NC_006151.1 | + | 109374 | 0.67 | 0.626021 |
Target: 5'- cCUCUuccgcccccgccgCACCACCGccgGCCCCaccaccuucGCGgCCGg -3' miRNA: 3'- -GAGA-------------GUGGUGGCaa-CGGGG---------CGCgGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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