miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 5' -56.8 NC_006151.1 + 29362 0.66 0.866673
Target:  5'- ----gGGgGCGGGgagCggGGCGGGAUGGg -3'
miRNA:   3'- agguaCCgCGUCCa--Ga-CUGCCCUACU- -5'
29488 5' -56.8 NC_006151.1 + 73030 0.66 0.851314
Target:  5'- cCCAgggauUGGCGguGGcgCgGugGGGGUGc -3'
miRNA:   3'- aGGU-----ACCGCguCCa-GaCugCCCUACu -5'
29488 5' -56.8 NC_006151.1 + 23921 0.66 0.851314
Target:  5'- cCCGacgGGcCGCcGGUCgucgugGACGGGGUGc -3'
miRNA:   3'- aGGUa--CC-GCGuCCAGa-----CUGCCCUACu -5'
29488 5' -56.8 NC_006151.1 + 127312 0.67 0.83516
Target:  5'- gCCGUcguccGCGCGGGUCcgcgGGCGGGGg-- -3'
miRNA:   3'- aGGUAc----CGCGUCCAGa---CUGCCCUacu -5'
29488 5' -56.8 NC_006151.1 + 19051 0.67 0.826803
Target:  5'- gUCCAccgGGCGCAGGcacUCgGGCGcgcgcGGGUGGu -3'
miRNA:   3'- -AGGUa--CCGCGUCC---AGaCUGC-----CCUACU- -5'
29488 5' -56.8 NC_006151.1 + 75090 0.67 0.809565
Target:  5'- cUCCA-GGCGCAGGUCggcguUGcCGGGc--- -3'
miRNA:   3'- -AGGUaCCGCGUCCAG-----ACuGCCCuacu -5'
29488 5' -56.8 NC_006151.1 + 24277 0.68 0.773229
Target:  5'- cUCCGgaGGCGCGuGUCgGGCGGGAa-- -3'
miRNA:   3'- -AGGUa-CCGCGUcCAGaCUGCCCUacu -5'
29488 5' -56.8 NC_006151.1 + 27228 0.68 0.763807
Target:  5'- gCCGUGGaCGCgcaccuccucgGGGUCgGGCGGGGg-- -3'
miRNA:   3'- aGGUACC-GCG-----------UCCAGaCUGCCCUacu -5'
29488 5' -56.8 NC_006151.1 + 17013 0.7 0.664684
Target:  5'- -aCAUGGCGCGGGUg-GcCGGGAUc- -3'
miRNA:   3'- agGUACCGCGUCCAgaCuGCCCUAcu -5'
29488 5' -56.8 NC_006151.1 + 78666 0.7 0.64426
Target:  5'- gCCggGGCGCGGGUgCUGgACGGGc--- -3'
miRNA:   3'- aGGuaCCGCGUCCA-GAC-UGCCCuacu -5'
29488 5' -56.8 NC_006151.1 + 27435 0.7 0.623796
Target:  5'- gUCCAUGGgCGCggcggacgcgguGGGUCgggGGCGGGcgGu -3'
miRNA:   3'- -AGGUACC-GCG------------UCCAGa--CUGCCCuaCu -5'
29488 5' -56.8 NC_006151.1 + 40770 0.71 0.61357
Target:  5'- gCCAucuUGGCGguGGUCUc-UGGGGUGGa -3'
miRNA:   3'- aGGU---ACCGCguCCAGAcuGCCCUACU- -5'
29488 5' -56.8 NC_006151.1 + 99896 0.74 0.42022
Target:  5'- aCC-UGGCGCAGGUgCUGACGuGGGc-- -3'
miRNA:   3'- aGGuACCGCGUCCA-GACUGC-CCUacu -5'
29488 5' -56.8 NC_006151.1 + 45004 1.09 0.002148
Target:  5'- cUCCAUGGCGCAGGUCUGACGGGAUGAg -3'
miRNA:   3'- -AGGUACCGCGUCCAGACUGCCCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.