miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2949 3' -57.1 NC_001493.1 + 52909 0.66 0.863393
Target:  5'- cCCUCGGaGUCaGUCu----CGAGGACg -3'
miRNA:   3'- cGGAGCC-CAGcCAGugcauGCUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 41893 0.66 0.855827
Target:  5'- cGCCUUGGGUUauaaGGUgGCcaACGAcGGAUg -3'
miRNA:   3'- -CGGAGCCCAG----CCAgUGcaUGCU-CCUG- -5'
2949 3' -57.1 NC_001493.1 + 46246 0.66 0.848063
Target:  5'- gGUCUCacccgGGGUUGccagaucCGCGUACGGGGGCc -3'
miRNA:   3'- -CGGAG-----CCCAGCca-----GUGCAUGCUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 29203 0.67 0.840109
Target:  5'- uGCuCUCGGGcaUCGGcCAacUGgGAGGACa -3'
miRNA:   3'- -CG-GAGCCC--AGCCaGUgcAUgCUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 35352 0.67 0.840109
Target:  5'- cCCUCGGGUCGaagCGCuccaGUACaGGGAUa -3'
miRNA:   3'- cGGAGCCCAGCca-GUG----CAUGcUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 110450 0.67 0.839303
Target:  5'- aCCUCGGGUCGaugacccGUCACGguaaAGGAg -3'
miRNA:   3'- cGGAGCCCAGC-------CAGUGCaugcUCCUg -5'
2949 3' -57.1 NC_001493.1 + 56782 0.67 0.831971
Target:  5'- cGCCUCGGGcggaUCGGU-GCccACGAGcGAUa -3'
miRNA:   3'- -CGGAGCCC----AGCCAgUGcaUGCUC-CUG- -5'
2949 3' -57.1 NC_001493.1 + 22034 0.67 0.831971
Target:  5'- cCCUCGGGaaGGUCuauCGUGuCG-GGAUg -3'
miRNA:   3'- cGGAGCCCagCCAGu--GCAU-GCuCCUG- -5'
2949 3' -57.1 NC_001493.1 + 96174 0.67 0.83197
Target:  5'- aUCUUGacGGUCGGUgaGCGUgACGGGGAUa -3'
miRNA:   3'- cGGAGC--CCAGCCAg-UGCA-UGCUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 108702 0.67 0.83197
Target:  5'- aGCCUCGGGUCcaUCGCagGCGAuGGuCg -3'
miRNA:   3'- -CGGAGCCCAGccAGUGcaUGCU-CCuG- -5'
2949 3' -57.1 NC_001493.1 + 88846 0.67 0.83197
Target:  5'- cGgCUCGGuGgccgUGGUCAUGUACaGGGGGa -3'
miRNA:   3'- -CgGAGCC-Ca---GCCAGUGCAUG-CUCCUg -5'
2949 3' -57.1 NC_001493.1 + 88664 0.67 0.81517
Target:  5'- aGgUUCGGGUCGuguGUCAacccacCGUACGuGGGCc -3'
miRNA:   3'- -CgGAGCCCAGC---CAGU------GCAUGCuCCUG- -5'
2949 3' -57.1 NC_001493.1 + 113651 0.67 0.812593
Target:  5'- uGUCUCGGGgCGGaCugGUauccgaagucgagaACGAGGGg -3'
miRNA:   3'- -CGGAGCCCaGCCaGugCA--------------UGCUCCUg -5'
2949 3' -57.1 NC_001493.1 + 111511 0.67 0.806523
Target:  5'- cGCC-CGGuGUCGGUCACu----GGGACa -3'
miRNA:   3'- -CGGaGCC-CAGCCAGUGcaugcUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 128531 0.67 0.806523
Target:  5'- cGCCaUCGGuUCGGUCGCGgACaGGGuCa -3'
miRNA:   3'- -CGG-AGCCcAGCCAGUGCaUGcUCCuG- -5'
2949 3' -57.1 NC_001493.1 + 62315 0.67 0.806523
Target:  5'- ---cCGGGUCGGUC-C--ACGGGGGCu -3'
miRNA:   3'- cggaGCCCAGCCAGuGcaUGCUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 12976 0.67 0.806523
Target:  5'- cGCCaUCGGuUCGGUCGCGgACaGGGuCa -3'
miRNA:   3'- -CGG-AGCCcAGCCAGUGCaUGcUCCuG- -5'
2949 3' -57.1 NC_001493.1 + 109839 0.68 0.788776
Target:  5'- cGCgUCGaGGaacccUCGGUCGCucACGGGGAUg -3'
miRNA:   3'- -CGgAGC-CC-----AGCCAGUGcaUGCUCCUG- -5'
2949 3' -57.1 NC_001493.1 + 128522 0.68 0.788776
Target:  5'- gGCCggaCGGGUcCGGUCACc-ACGuGGAg -3'
miRNA:   3'- -CGGa--GCCCA-GCCAGUGcaUGCuCCUg -5'
2949 3' -57.1 NC_001493.1 + 12968 0.68 0.788776
Target:  5'- gGCCggaCGGGUcCGGUCACc-ACGuGGAg -3'
miRNA:   3'- -CGGa--GCCCA-GCCAGUGcaUGCuCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.