miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2949 5' -51.3 NC_001493.1 + 4034 0.66 0.989948
Target:  5'- -cACCccGGAcggAC-CGGCUCAuguCCCg -3'
miRNA:   3'- gaUGGuaCCUua-UGcGCCGAGUu--GGG- -5'
2949 5' -51.3 NC_001493.1 + 23599 0.66 0.989948
Target:  5'- -gACgGUcGGGuuGUGCGCGGCcuUCggUCCg -3'
miRNA:   3'- gaUGgUA-CCU--UAUGCGCCG--AGuuGGG- -5'
2949 5' -51.3 NC_001493.1 + 40654 0.66 0.989948
Target:  5'- -cACCGUGc--UACGCguccacGGCUCgGACCCg -3'
miRNA:   3'- gaUGGUACcuuAUGCG------CCGAG-UUGGG- -5'
2949 5' -51.3 NC_001493.1 + 55029 0.66 0.989948
Target:  5'- -gACCGUGG-----GCGGCUCGcACCa -3'
miRNA:   3'- gaUGGUACCuuaugCGCCGAGU-UGGg -5'
2949 5' -51.3 NC_001493.1 + 119588 0.66 0.989948
Target:  5'- -cACCccGGAcggAC-CGGCUCAuguCCCg -3'
miRNA:   3'- gaUGGuaCCUua-UGcGCCGAGUu--GGG- -5'
2949 5' -51.3 NC_001493.1 + 8460 0.66 0.989121
Target:  5'- -cGCCAcGGAGUcacuccuguggcgccGCGCcggGGCUCccACCCa -3'
miRNA:   3'- gaUGGUaCCUUA---------------UGCG---CCGAGu-UGGG- -5'
2949 5' -51.3 NC_001493.1 + 124014 0.66 0.989121
Target:  5'- -cGCCAcGGAGUcacuccuguggcgccGCGCcggGGCUCccACCCa -3'
miRNA:   3'- gaUGGUaCCUUA---------------UGCG---CCGAGu-UGGG- -5'
2949 5' -51.3 NC_001493.1 + 28042 0.66 0.988542
Target:  5'- aCUACCAcGGAucGUACGCcGGUggUCGugaGCUCa -3'
miRNA:   3'- -GAUGGUaCCU--UAUGCG-CCG--AGU---UGGG- -5'
2949 5' -51.3 NC_001493.1 + 93829 0.66 0.988542
Target:  5'- -gACCcgGGggUAaauCGGCgggcgCGACCUg -3'
miRNA:   3'- gaUGGuaCCuuAUgc-GCCGa----GUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 106143 0.66 0.986987
Target:  5'- --cCCAUGGAGgugACG-GGUgacuucCGACCCg -3'
miRNA:   3'- gauGGUACCUUa--UGCgCCGa-----GUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 113448 0.66 0.986987
Target:  5'- gUugCGaGGAAUGCaaGaCUCGACCCg -3'
miRNA:   3'- gAugGUaCCUUAUGcgCcGAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 89535 0.66 0.986987
Target:  5'- uUGuCCugagGGAGcGCGCGGCgUCcguACCCg -3'
miRNA:   3'- gAU-GGua--CCUUaUGCGCCG-AGu--UGGG- -5'
2949 5' -51.3 NC_001493.1 + 53973 0.66 0.985275
Target:  5'- aUGCCGccaacuuauUGGGgcGUcCGCGGC-CAAUCCg -3'
miRNA:   3'- gAUGGU---------ACCU--UAuGCGCCGaGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 123608 0.66 0.985275
Target:  5'- -cACCGcucGGggUGCG-GGCUCGGuCUCg -3'
miRNA:   3'- gaUGGUa--CCuuAUGCgCCGAGUU-GGG- -5'
2949 5' -51.3 NC_001493.1 + 8053 0.66 0.985275
Target:  5'- -cACCGcucGGggUGCG-GGCUCGGuCUCg -3'
miRNA:   3'- gaUGGUa--CCuuAUGCgCCGAGUU-GGG- -5'
2949 5' -51.3 NC_001493.1 + 62244 0.66 0.983397
Target:  5'- -gGCUccGGGAUcguuCGCcgagGGUUCAACCCg -3'
miRNA:   3'- gaUGGuaCCUUAu---GCG----CCGAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 110341 0.66 0.983397
Target:  5'- --cCCAUcGAGUuucacuccggGCGCgGGCUCGACCUu -3'
miRNA:   3'- gauGGUAcCUUA----------UGCG-CCGAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 114248 0.66 0.983397
Target:  5'- uUGCCGUGGAAUuuUGUGGaaauCUCGggagccaccACCCg -3'
miRNA:   3'- gAUGGUACCUUAu-GCGCC----GAGU---------UGGG- -5'
2949 5' -51.3 NC_001493.1 + 118572 0.67 0.982186
Target:  5'- -cGCCGUGGucgaacagaaggGCGCGa-UCGACCCg -3'
miRNA:   3'- gaUGGUACCuua---------UGCGCcgAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 3018 0.67 0.982186
Target:  5'- -cGCCGUGGucgaacagaaggGCGCGa-UCGACCCg -3'
miRNA:   3'- gaUGGUACCuua---------UGCGCcgAGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.