miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2949 5' -51.3 NC_001493.1 + 3018 0.67 0.982186
Target:  5'- -cGCCGUGGucgaacagaaggGCGCGa-UCGACCCg -3'
miRNA:   3'- gaUGGUACCuua---------UGCGCcgAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 4034 0.66 0.989948
Target:  5'- -cACCccGGAcggAC-CGGCUCAuguCCCg -3'
miRNA:   3'- gaUGGuaCCUua-UGcGCCGAGUu--GGG- -5'
2949 5' -51.3 NC_001493.1 + 4451 0.67 0.974038
Target:  5'- -cGCCuagacagcggguGUGGAAUACGCGacGCUC--CCCu -3'
miRNA:   3'- gaUGG------------UACCUUAUGCGC--CGAGuuGGG- -5'
2949 5' -51.3 NC_001493.1 + 5221 0.7 0.912573
Target:  5'- gUACaCGUGuGGucGUGCGaCGGuCUCGACCCc -3'
miRNA:   3'- gAUG-GUAC-CU--UAUGC-GCC-GAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 8053 0.66 0.985275
Target:  5'- -cACCGcucGGggUGCG-GGCUCGGuCUCg -3'
miRNA:   3'- gaUGGUa--CCuuAUGCgCCGAGUU-GGG- -5'
2949 5' -51.3 NC_001493.1 + 8343 0.72 0.821517
Target:  5'- -aACCGUGGAGgggccGCGCGuCUC-GCCCg -3'
miRNA:   3'- gaUGGUACCUUa----UGCGCcGAGuUGGG- -5'
2949 5' -51.3 NC_001493.1 + 8460 0.66 0.989121
Target:  5'- -cGCCAcGGAGUcacuccuguggcgccGCGCcggGGCUCccACCCa -3'
miRNA:   3'- gaUGGUaCCUUA---------------UGCG---CCGAGu-UGGG- -5'
2949 5' -51.3 NC_001493.1 + 10603 0.72 0.812544
Target:  5'- -gACCu--GAccACGCGGCUCGAUCCg -3'
miRNA:   3'- gaUGGuacCUuaUGCGCCGAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 16914 0.69 0.935128
Target:  5'- -cACCggGGAGagacACGCGGUUCAACg- -3'
miRNA:   3'- gaUGGuaCCUUa---UGCGCCGAGUUGgg -5'
2949 5' -51.3 NC_001493.1 + 18187 0.67 0.979104
Target:  5'- --cCCAUGGAgguGUACGCuugGGagaCGGCCCa -3'
miRNA:   3'- gauGGUACCU---UAUGCG---CCga-GUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 23599 0.66 0.989948
Target:  5'- -gACgGUcGGGuuGUGCGCGGCcuUCggUCCg -3'
miRNA:   3'- gaUGgUA-CCU--UAUGCGCCG--AGuuGGG- -5'
2949 5' -51.3 NC_001493.1 + 28042 0.66 0.988542
Target:  5'- aCUACCAcGGAucGUACGCcGGUggUCGugaGCUCa -3'
miRNA:   3'- -GAUGGUaCCU--UAUGCG-CCG--AGU---UGGG- -5'
2949 5' -51.3 NC_001493.1 + 31730 0.67 0.973486
Target:  5'- -gACCGUGGAAcacacggucacCGCGuCUCGAUCCa -3'
miRNA:   3'- gaUGGUACCUUau---------GCGCcGAGUUGGG- -5'
2949 5' -51.3 NC_001493.1 + 38581 0.68 0.953591
Target:  5'- -gGCCAUGGAGU-CGaUGGUcgCGACCa -3'
miRNA:   3'- gaUGGUACCUUAuGC-GCCGa-GUUGGg -5'
2949 5' -51.3 NC_001493.1 + 40654 0.66 0.989948
Target:  5'- -cACCGUGc--UACGCguccacGGCUCgGACCCg -3'
miRNA:   3'- gaUGGUACcuuAUGCG------CCGAG-UUGGG- -5'
2949 5' -51.3 NC_001493.1 + 42095 0.67 0.971194
Target:  5'- -cGCCGUGGAcucGCcCGGCUCggUCg -3'
miRNA:   3'- gaUGGUACCUua-UGcGCCGAGuuGGg -5'
2949 5' -51.3 NC_001493.1 + 43906 0.67 0.976671
Target:  5'- -gGCCAUcgcGGAGUcauCGgGGCUCGuggccaACCCc -3'
miRNA:   3'- gaUGGUA---CCUUAu--GCgCCGAGU------UGGG- -5'
2949 5' -51.3 NC_001493.1 + 45003 0.68 0.964849
Target:  5'- aCUAUCGgcaGGcc-GCGCGGCUCAcCUCg -3'
miRNA:   3'- -GAUGGUa--CCuuaUGCGCCGAGUuGGG- -5'
2949 5' -51.3 NC_001493.1 + 48546 0.67 0.976671
Target:  5'- -gACC-UGGAGUACG-GGUUCucGCUCa -3'
miRNA:   3'- gaUGGuACCUUAUGCgCCGAGu-UGGG- -5'
2949 5' -51.3 NC_001493.1 + 52852 0.69 0.935128
Target:  5'- --uUCAUGGGcaucgacCGCauGGCUCAACCCg -3'
miRNA:   3'- gauGGUACCUuau----GCG--CCGAGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.